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Detailed information on CNT30386304


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672771Triticum turgidumSetaria viridis18.2229.792.8698forward
CNT30179357Triticum turgidumSecale cereale58.9232.6888.96317forward
CNT30553525Triticum turgidumOryza glaberrima30.6723.3195.15165forward
CNT3017553Triticum turgidumZea mays20.0741.8692.59108forward
CNT30680899Triticum turgidumTriticum urartu34.9447.4796.28188forward
CNT30720672Triticum turgidumTriticum spelta48.1449.1588.8259forward
CNT30349409Triticum turgidumEragrostis tef32.3414.5591.38174forward
CNT30596052Triticum turgidumOryza meridionalis31.4131.0195.27169forward
CNT30101149Triticum turgidumOryza rufipogon31.4131.0195.27169forward
CNT30604057Triticum turgidumOryza punctata21.1928.6496.49114forward

Expression of CNT30386304

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MRACEYRDGLWQHVLRFMVCLYYIFYFTQNK*

>peptide 2 (70 aa)
MAASSQVAAQLVALPTRGMELILVNASTLKLAPHMTPSLSTRGNALSRFMGCSKLLSEGGAAAEGGGEGVG

>peptide 3 (61 aa)
MVCGSMCLDSWFVCTIFFILLKTSDDSVALLDWKQTTVRVSAPTPTHGSDQIRMYIAKEKK*

Sequence

>CNT30386304
TTAGTTGAGAGGATCCATGTTGCGTGTATCTTATGAGAGCGTGCGAGTACAGGGATGGTTTGTGGCAGCATGTGCTTAGATTCATGGTTTGTTTGTACTA
TATTTTTTATTTTACTCAAAACAAGTGACGACTCAGTAGCACTCTTGGACTGGAAGCAAACAACCGTACGTGTCAGCGCGCCCACGCCCACACACGGCTC
AGATCAGATCAGAATGTACATTGCCAAAGAAAAAAAGTAAGTAAAATGCGGTAAGCTCAAATTCAGAAGTCCGACGAGCTAGGCGAGCGGCGCCGGCGAG
GTGATGCACACCAGCCCAGCTAGATGGCGGCGTCGTCCCAGGTGGCGGCCCAGTTGGTGGCGCTGCCGACGCGGGGCATGGAGTTGATCTTGGTGAATGC
GTCGACCTTGAAGTTGGCGCCGCACATGACGCCCTCGCTGTCCACGCGCGGGAACGCCTTGAGCCGGTTCATGGGGTGCTCGAAGCTCTTGAGCGAGGGC
GGCGCCGCCGCCGAAGGAGGTGGAGAAGGCGTCGGAGG