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Detailed information on CNT30386243


BLAST search results

BLAST vs Swiss-Prot:
sp|Q09020|PR4_PHAVU, E-value = 8e-20

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524561Triticum turgidumSetaria italica2615.1185.8176forward
CNT30533654Triticum turgidumEucalyptus grandis17.7324.4987.5120forward
CNT30256332Triticum turgidumAvena sativa37.5240.2591.34254forward
CNT30467515Triticum turgidumSaccharum spontaneum22.1620.3888150forward
CNT30135597Triticum turgidumLolium perenne36.3447.5891.06246forward
CNT30346089Triticum turgidumEragrostis tef22.4527.0588.82152forward
CNT30597257Triticum turgidumOryza meridionalis22.1630.0692.67150forward
CNT30371492Triticum turgidumOryza glumipatula22.1627.9392150forward
CNT30108688Triticum turgidumOryza longistaminata22.1626.7492.67150forward
CNT30104475Triticum turgidumOryza rufipogon22.1626.6992.67150forward
CNT30578401Triticum turgidumOryza barthii22.1626.8392.67150forward
CNT30581754Triticum turgidumEchinochloa crusgalli22.1619.6188150forward
CNT30118085Triticum turgidumOryza nivara22.1628.0992.67150forward

Expression of CNT30386243

Peptides detected in this lncRNA

>peptide 1 (86 aa)
KVRVQSSLWKIGARASHPLPRTLARLSTSAAAAAEKKKKDDLRRELPPVPLLPQPEGRRVLRQEENGRAEAEGPEVQGQREQACNE*

>peptide 2 (74 aa)
MSSLSCEKKMMNEEKPYLQMWIGVWISFCKIAIVSFLSIRYKSDGLYCRMADTPSSSTLFFIRVEIYLNCMPGMI

>peptide 3 (48 aa)
MIYDVNSPLFRSFLSQKGGASSDKRKMEEQKPKDQRFKANENKPVMNE*

Sequence

>CNT30386243
CGAAGGTGAGGGTACAAAGCAGCCTCTGGAAGATTGGAGCCCGTGCGTCTCACCCTCTCCCACGAACCCTAGCTAGGCTCTCCACATCGGCGGCGGCGGC
GGCAGAGAAGAAGAAGAAAGATGATCTACGACGTGAACTCCCCCCTGTTCCGCTCCTTCCTCAGCCAGAAGGGCGGCGCGTCCTCCGACAAGAGGAAAAT
GGAAGAGCAGAAGCCGAAGGACCAGAGGTTCAAGGCCAACGAGAACAAGCCTGTAATGAATGAATGAGCGTCGCCTGGACAGTCCGGTGCCTGCAAGGCC
TAGCTGCCAATCATGTGACTCCTATATGTTAAAATGAGTGGTGTGAACATTTGCTTGGTCGTTCTGAAAACTATCCAAGTATCCAGTACTGTGTTTTAAG
TTCCTACTAGCAAGATGCCCGTGCGTTGCACGGAACATCAAGATGCATTTGTATGAGTAGTTTATCTTGTGAGAAAAAAATGATGAACGAGGAAAAGCCT
TATTTGCAAATGTGGATAGGGGTGTGGATATCTTTTTGCAAAATTGCCATAGTTTCCTTCCTATCCATCAGATATAAATCGGACGGCTTATATTGCAGGA
TGGCAGACACACCATCATCATCAACTCTGTTTTTTATAAGAGTAGAGATATATCTAAACTGCATGCCTGGAATGATA