Detailed information on CNT30385971


BLAST search results

BLAST vs Swiss-Prot:
sp|P84516|PER1_SORBI, E-value = 8e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673410Triticum turgidumSetaria viridis2040.2886.2187forward
CNT30101405Triticum turgidumOryza rufipogon40.9211.9989.89178forward
CNT30116506Triticum turgidumOryza nivara40.9212.6789.89178forward

Expression of CNT30385971

Peptides detected in this lncRNA

>peptide 1 (94 aa)
SRFCSRSGCLLQLAASLREKVSSARCDRSSKLPHCDRPMVCAPESATRSARSRRPLALKARARAETLAVAGDGRALTAFCDAGARLSNWPCGTV*

>peptide 2 (32 aa)
MSAQDTVAPQAACTLARMSSTSCSARGCSVVLG

>peptide 3 (57 aa)
PGSAAAPGACCSWRPACARRYRRRAATGLRSCRTATARWCARRRAPRGRQGRGGPWR*

>peptide 4 (80 aa)
VQVLQPLRVLAAVGGQLAREGIVGALRPVFEAAALRPPDGVRAGERHEVGKVAEALGAEGAREGGDAGGGRRREGVDGVL*

Sequence

>CNT30385971
GTCCAGGTTCTGCAGCCGCTCCGGGTGCTTGCTGCAGTTGGCGGCCAGCTTGCGCGAGAAGGTATCGTCGGCGCGCTGCGACCGGTCTTCGAAGCTGCCG
CACTGCGACCGCCCGATGGTGTGCGCGCCGGAGAGCGCCACGAGGTCGGCAAGGTCGCGGAGGCCCTTGGCGCTGAAGGCGCGCGCGAGGGCGGAGACGC
TGGCGGTGGCCGGCGACGGGAGGGCGTTGACGGCGTTCTGTGACGCCGGGGCGAGGCTGTCGAACTGGCCCTGCGGCACGGTGTAGTTGGGCCCGCCGGA
GAGCACGACGGCGTCGCGGGTGGCCAGCGCCGAGATGTCGGCACAGGACACGGTGGCGCCGCAGGCCGCGTGCACCTTGGCGCGGATGTCCTCCACCAGC
TGCAGCGCCCGCGGCTGCAGCGTGGTGTTGGGCCC