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Detailed information on CNT30385905


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT001703, E-value = 8e-24

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618428Triticum turgidumSesamum indicum27.0729.8284.35147forward
CNT30588719Triticum turgidumMusa acuminata42.3653.9981.74230forward
CNT3087008Triticum turgidumVigna radiata33.728.6482.51183forward
CNT30116376Triticum turgidumOryza nivara46.4146.4186.11252forward

Expression of CNT30385905

Peptides detected in this lncRNA

>peptide 1 (57 aa)
MSRTAKRPRGGYWAKVSTTMGLVGIILTNPASPFLRNLGAASISLPDRRSILVWISAN

>peptide 2 (52 aa)
KPLSNMLQAADIKRLQISLKYKIATLSDEVSPTQPNDTMTTVISSSNTARHK*

Sequence

>CNT30385905
AAACCATTATCAAATATGCTACAGGCAGCAGATATAAAACGACTCCAAATATCACTCAAATATAAAATAGCAACTTTATCTGACGAAGTTTCACCAACAC
AACCGAACGATACTATGACCACAGTAATAAGCAGTTCGAACACTGCTCGACACAAATAACCAAAGCTTAACAAGTTCGCAAATCCGCTAACACGACTATC
ACCACCACCATATACCGCCACCACCACCATACATGTGGTAAAGAACCACCAACAACGCCACCGCCCGACACCATCTCATTTCTTCTTGGCCGCAGCCTTG
GTCACCTTTGCGCCGGTCGGATCCTTCTTCTCCACGCTCTTGATCACGCCAACGGCGACCGTCTGCCTCATGTCACGGACAGCAAAGCGACCCAGGGGAG
GGTACTGGGCGAAGGTCTCCACCACCATGGGCTTGGTGGGGATCATCTTGACGAACCCAGCATCACCGTTCTTGAGGAACTTGGGCGCCGCCTCAATCTC
CTTGCCAGACCGCCGGTCAATCTTGGTCTGGATCTCAGCAAAC