Detailed information on CNT30385574


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30503431Triticum turgidumNicotiana attenuata51.557.3594.32792forward
CNT3044711Triticum turgidumPrunus dulcis30.6998.9593.43472forward
CNT30588765Triticum turgidumMusa acuminata31.669.6395.68486forward
CNT30720907Triticum turgidumTriticum spelta62.4894.1298.23961forward

Expression of CNT30385574

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MASVTYFSAVAPGMSLVEKQSLVHGAHTSALQRLVLGPRLEAFSLPLLTLKKQGHLVSLNL*

>peptide 2 (71 aa)
MDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTH*

>peptide 3 (83 aa)
MFSLLKPTFSLPLRRPPLSRLLPSKALTHPPWTNLAEETLGFRGIGFSPMFSLLKPTFSLPLRRPPLSRLLPSKAERSPTNAF*

>peptide 4 (99 aa)
LVPLGILYLPTCVCFGYRYPFVEGRSSFSWEYGISYILQRRSAWYEPRGEAIASPRGSYFSAAALGTRTSARGIFSTPSYPEKAGSPCVLKPITIFWLT*

>peptide 5 (42 aa)
MDEPCGGNLGFSGHWILTNVFVTQADILASSSSTPAFAVASL*

>peptide 6 (55 aa)
MSRRLILQQARGQRSLSPPTAWELSTVSRSISLPTRGSFHLSLTVLLRYRSPRSI*

>peptide 7 (54 aa)
MSSQLLRLNAFRGEPASSGFEWHFTPNHNSSTDSSTSVGSDLRLVSFKLHPGHG*

>peptide 8 (42 aa)
MDEPCGGNLGFSGHWILTNVFVTQADILASASSTPAFAVASL*

Sequence

>CNT30385574
GTCTCGTGCCCCTAGGTATTCTCTACCTACCCACCTGTGTCTGTTTCGGGTACAGGTACCCTTTTGTTGAAGGTCGTTCGAGCTTTTCCTGGGAGTATGG
CATCAGTTACATACTTCAGCGCCGTAGCGCCTGGTATGAGCCTCGTGGAGAAGCAATCGCTAGTCCACGGGGCTCATACTTCAGCGCTGCAGCGCTTGGT
ACTCGGACCTCGGCTCGAGGCATTTTCTCTACCCCTTCTTACCCTGAAAAAGCAGGGTCACCTTGTGTCCTTAAACCTATAACCATCTTTTGGCTAACCT
AGCCTGCTCCATCCCTCCGTACCAACAAGGGGTAGTACAGGAATATTGACCTATTGTCCATCGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCAC
CCTCCATGGACGAACCTTGCGGAGGAAACCTTGGGTTTTCGGGGCATTGGATTCTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCTCTTC
GTCGACCCCCGCTTTCGCGGTTGCTTCCCTCTAAGGCCCTGACTCACCCTCCATGGACGAACCTTGCGGAGGAAACCTTGGGTTTTCGGGGCATTGGATT
CTCACCAATGTTTTCGTTACTCAAGCCGACATTCTCGCTTCCGCTTCGTCGACCCCCGCTTTCGCGGTTGCTTCCCTCTAAGGCGGAACGCTCCCCTACC
AATGCATTTTGACATCCCATAGCTTCAGCAGATCGCTTAGCCCCGTTCATCTTCAGCGCAAGGGCGCTCGATCAGTGAGCTATTACGCACTCTTTAAAGG
GGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTTTGCACCCCCACCTCCTTTATCACTGAGCGGTCATTTATGGGCCTTAGCTGGTGATCCGGGCTGTT
TCCCTCTCGACGATGAAGCTTATCCCCCATCGTCTCACTGGCCGACCTTGACCCCTGTTATTTTTGGGTCATATCTAGTATTCAGAGTTTGCCTCGATTT
GGTACTGCTCGCGCAGCTCGCACCGAAACGGTGCTTTATCCCTAGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTG
GGTTCGAGTGGCATTTCACCCCTAACCACAACTCATCCACTGATTCTTCAACATCAGTCGGTTCGGACCTCCGCTTAGTTTCATTTAAGCTTCATCCTGG
TCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAATCGCCCTATTAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTCCCTTAACCA
AGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTC
TATTTCACTACCCACTAGGGGTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCT
GATTCACACGGGATTCCACGTGCCCCATGCTACTCGGG