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Detailed information on CNT3038556


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39817|CALX_SOYBN, E-value = 2e-146

BLAST vs NONCODE:
NONVVIT003147, E-value = 1e-48

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676366Cucumis meloSetaria viridis13.9228.1389.09110forward
CNT30517641Cucumis meloJuglans regia17.3425.4688.32137forward
CNT30377662Cucumis meloArabidopsis thaliana44.6839.0579.6353forward
CNT30278532Cucumis meloChenopodium quinoa40.8929.3981.73323forward
CNT30728459Cucumis meloCorchorus capsularis27.3434.8485.65216forward
CNT30629341Cucumis meloVigna unguiculata52.533879.28415forward
CNT30709122Cucumis meloGlycine max24.4354.8383.42193forward
CNT3043981Cucumis meloPrunus dulcis13.0429.2684.47103forward
CNT30164689Cucumis meloPistacia vera23.5433.8284.95186forward
CNT30397803Cucumis meloTriticum turgidum28.128.2879.73222forward
CNT30561418Cucumis meloActinidia chinensis42.6633.4382.2337forward
CNT30238817Cucumis meloBrassica oleracea14.4321.3985.96114forward
CNT30144554Cucumis meloMedicago truncatula52.9148.8379.9418forward
CNT30605054Cucumis meloGossypium raimondii43.5460.6781.4344forward
CNT30126269Cucumis meloCorymbia citriodora12.9126.9186.27102forward
CNT30349705Cucumis meloEragrostis tef25.728.9680.79203forward
CNT30366134Cucumis meloSorghum bicolor23.829.7982.45188forward
CNT30120413Cucumis meloCitrus clementina38.6137.782.62305forward
CNT30149228Cucumis meloBrachypodium distachyon13.0421.6886.41103forward
CNT30585446Cucumis meloEchinochloa crusgalli13.9236.4287.27110forward
CNT30116414Cucumis meloOryza nivara10.1328.5786.2580forward
CNT30725707Cucumis meloLupinus angustifolius17.2224.6886.03136forward
CNT3048947Cucumis meloCucumis sativus38.6121.5596.07305forward

Expression of CNT3038556

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MMLSVLSSLRILMLHDEVHLVRSPALVRSKHDRIRRFI

>peptide 2 (46 aa)
FSSRYEVASFSSLAIKMLSNKIPSCMVQISIPIAATGSKSGFSISK*

>peptide 3 (48 aa)
ISHHGMKSQVSRLWRSKCCQTRYRLAWSRSQYQLQPQDRSQVFQFRSS*

Sequence

>CNT3038556
ATTTCTCATCACGGTATGAAGTCGCAAGTTTCTCGTCTTTGGCGATCAAAATGTTGTCAAACAAGATACCGTCTTGCATGGTCCAGATCTCAATACCAAT
TGCAGCCACAGGATCGAAGTCAGGTTTTTCAATTTCGAAGTAGCTAGGGTTAGGGATTTGCCTAGGCTTCCATATTCCCTTGTAGTTAGGATTGTCAATT
TCTGGGGCGTGCCACTTGCCCTTGTATTCGGGGTTTCTCTTCATTGGTTTCTTCCATTCACCACAACCAGGAGCTGTCTCACATTTTGGGTTATCAATCT
TTGGTGCCTCCCATTCACCATCTTCTTCGTCATCCCAATCTTCTGGCTTGGTGGCCTCAGGATCATCGATCTCTTCAGGCTTTTCAGCTTCCTCATCTAC
AATTTCGATTGGTGCATCCTCATCCCAGTCATCTGGCTTCACTGCATTAGGATCGGGAATTTTCGCTCTCTCATCCCAATCCTCAGGTTTCTTGTCGTCT
GGATCGGCGATTGTCTTGGCAGGAATTATAGGCGGCTCAAAATCATCCTCAGAAAGGAAATTGGCCTTCTTCTTCTCACTCCCATCAATGAGAATGCGCA
CACTATTGCCAGATTCCAAAATGGCAGTGTAAACATGAGACAATTTGTCGGCTGGGACAGAAGGAGGATTCTTTAGATGATGCTCAGCGTACTCTCCAGT
CTTAGGATTCTTATGCTTCACGATGAAGTGCACCTTGTTCGTAGCCCCGCACTTGTCAGGTCCAAACATGATAGAATAAGGAGATTCATT