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Detailed information on CNT30385545


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30240769Triticum turgidumAvena sativa35.3844.2586.71346forward
CNT30466191Triticum turgidumSaccharum spontaneum16.6723.5592.02163forward
CNT3067371Triticum turgidumLeersia perrieri19.4325.2790.53190forward
CNT30342484Triticum turgidumEragrostis tef16.5625.2792.59162forward
CNT30596127Triticum turgidumOryza meridionalis19.2229.1590.43188forward
CNT30107264Triticum turgidumOryza longistaminata19.2224.989.89188forward
CNT30603959Triticum turgidumOryza punctata19.4324.8790190forward

Expression of CNT30385545

Peptides detected in this lncRNA

>peptide 1 (65 aa)
MNWIGRKIHLYNVNIGLYMLDWWERYLFNTLMLCLLWYILRYLTGFFQSNLETILQGANYLLQGS*

>peptide 2 (33 aa)
KSRTRRLTRRVYQPAKTETTAVHGKNLTCEVQI*

>peptide 3 (29 aa)
KKSHAAADATRVSAGKNRNYSCPRKKPYM*

>peptide 4 (29 aa)
MRCCVCSRLFLYVCIVHGCCGILMLLILS*

Sequence

>CNT30385545
GAAAAAGTCGCACGCGGCGGCTGACGCGACGCGTGTATCAGCCGGCAAAAACAGAAACTACAGCTGTCCACGGAAAAAACCTTACATGTGAAGTTCAGAT
CTGAAGTGTTTAGCTTCCGAACAAACCCACGCCATCGGCCGAGAGAAGTTCCTCTGAGAGATCCGCCCCGATCCCGCAGAACACCACGCCCTTCTTCATC
CTCAGAAAGTTCAACATCTCGCCGCTTGTTTCCGGATCTGAGCGAGGGATCTGCGGCGTCGGGTCTCATTGGGGGAGGATGAACTGGATCGGGCGCAAGA
TCCACCTGTACAATGTCAACATCGGCCTCTACATGCTCGATTGGTGGGAGCGCTACCTCTTCAATACATTGATGCTTTGCCTTCTCTGGTACATTCTTCG
GTATCTCACTGGGTTCTTTCAAAGTAATCTGGAGACCATCCTACAAGGTGCGAACTATCTTCTACAAGGTAGTTGATCATCGAAGGCAAAAGCACATATG
TTGATGGCTTTATGGAACGCCCCCCTGTAATCTATGTTTTGATTAGTCTCGTCTGAGAAACTAGAAAGGAACGACTTATGCGTTGTTGTGTTTGTAGCCG
TCTTTTTCTGTATGTTTGCATTGTCCATGGTTGCTGTGGTATATTGATGCTGCTGATTCTCAGTTGACTGCCTGGAACTTCCGTAAATCAAGTCACCTCG
GTTTGCACATCAGTAAAGCTAAAATTGCGGTTCAACTTTTAGTCTTCTCATTTTTCTTAGTTGGGTTCAACCTCTCCGGTAATTATGTAAGAGGATGTCA
TGAACTTGGCTATACACTGCCCATATGTATAGCCCTCTGTATTTTGGAATTTAGCTATTTTTTTACCTTATGTATTGTGGAATTCAAGTAATTTTTTGCT
GAAGCATTTTATTGCTAGTTTTGCGTGATTTCATACTGGTATCTTTGCCTTTGTTATCCGTGGACAAACTGACTGATG