Detailed information on CNT30385453


BLAST search results

BLAST vs Swiss-Prot:
sp|P26667|RBS2_WHEAT, E-value = 5e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30290662Triticum turgidumTriticum aestivum37.4610098.38678forward
CNT30251828Triticum turgidumAvena sativa26.5257.0187.08480forward

Expression of CNT30385453

Peptides detected in this lncRNA

>peptide 1 (87 aa)
MHLILPPLLTLPRLPLERRLTGRPAVDLRPWKGATVVADEAITAGHPLGADQVVDLLKEGLRGEGWQVRQGLELLDALNRPHLNRWN*

>peptide 2 (76 aa)
MNRMRTDAQYLVMSQLIVLTMLEKISRQAKNCSLWAALICIAGLFTINKALVVLSSSIWVLFRGWVWLYTLGMFCK*

>peptide 3 (44 aa)
MLHNLCSYKHRSYRTKNMLWSESRVLDKSEVHKRQSYIGHCFNS*

>peptide 4 (31 aa)
PPTSCETYPLQCQIKKVFRELTAGQWSACCI*

>peptide 5 (30 aa)
MHAPQPMFVQTQIIPNEKYALVGKQSPGQK*

Sequence

>CNT30385453
TCCACCAACTAGCTGTGAGACATATCCATTGCAGTGCCAAATAAAGAAAGTTTTCCGAGAATTAACAGCAGGACAATGGTCCGCTTGTTGTATATAATAA
ATATCACACTGGTGTTGTATATGTGTAGCCGGTGCTAGAATTTACATATGCATGCTCCACAACCTATGTTCGTACAAACACAGATCATACCGAACGAAAA
ATATGCTCTGGTCGGAAAGCAGAGTCCTGGACAAAAGTGAAGTTCACAAAAGACAATCATACATAGGCCATTGTTTCAACTCGTAGTTTAGGCCTTGCCA
GACTCCTCGCAACCCGGTGGCCTGAATGCGATGAAGCTGACGCACTGCACCTGGCGCAGGTTGTCGAAGCCGATGACGCGGACATAGGCGTCAGGGTACT
CCTTCTTGACCTCCTCCACCTCGTTGAGCACCTGCGTGGCGTCGGTTGTCGAAGCCGATGACGCGGACATAGGCGTCAGGGTACTCCTTCTTGACCTCCT
CCACCTCGTTGAGCACCTGTGTGGCGTCGGTGCACCCGAACATAGGCAGCTTCCACATTGTCCAGTATCGACCGTCATAGTATCCGGGGGAGCTATTGTG
CTCACGGAAGACGAAACCAACCTTGCTGAACTCGAGGCAGGGCACCCACTTGGAGCGGATCAAGTAGTCGACCTGCTTCAGGAGGGCTTCCGTGGAGAGG
GGTGGCAAGTAAGACAGGGTCTCAAACTTCTTGATGCCCTCAATTGGCCACACCTGAATGAATAGAATGCGAACAGATGCTCAATACTTGGTGATGAGTC
AATTAATTGTACTAACAATGCTAGAAAAAATCAGTCGACAAGCCAAAAATTGCTCCTTATGGGCAGCTCTCATATGCATTGCTGGGTTGTTCACAATCAA
TAAAGCTTTGGTTGTACTTAGTTCTAGTATATGGGTCCTATTTCGAGGATGGGTTTGGTTATATACATTGGGGATGTTCTGTAAGTGAATTACTTGCACT
GACAAAGAAACTCGTATCAGTTTAATTAGTGCCCCAACATACCTGCATGCACCTGATCCTTCCGCCGTTGCTGACGCTGCCGAGGCTGCCGCTGGAGCGG
CGGCTGACGGGCAGGCCGGCTGTGGACTTGAGACCCTGGAAGGGTGCGACGGTGGTAGCCGACGAAGCCATCACGGCAGGGCACCCACTTGGAGCGGATC
AGGTAGTCGACCTGCTTAAGGAGGGCCTCCGTGGAGAGGGGTGGCAAGTAAGACAGGGTCTCGAACTTCTTGATGCCCTCAATCGGCCACACCTGAATAG
ATGGAATTAACACAATTGATCAACACTTAGTGCTTAAAGAAAGACCTAGCCATAATAAGGCAAAAATTACTCCTTATGTCCATACATTTGTGGGGGGGTC
TCCACAAGCAAGAAAGCACAAGGGCACCTCTTTCTTATCGGTAGTGTATGGGCATTAAAATTAATATTATCTAGTACACATTGGAATAAAATCGATTTCA
ATTCACAAAGTTTATGAGTTAAATATTCCTACACATGTGAACCTGCTTACGGACTACATTGTGATGCACAGTTTGGCCGGGCATGTGGGCGTCCTACGGA
TAGCTTTGCCTATGTGCAGTGGAAATACCCGATAAATTAATCAATTGTGGCAACAAAAACATTCATGCCAGCTTAGTGTCCGTCATCCTTCGCTAAAAAA
AATCGAAAAGGAGGATAACTCCAGCCTCTGCATCAAGTGATATGCACACTGTCATTTTTATTATATTATTCGAAAGAGTCTAACAAAACAAATACGATTT
TAAACCAAAG