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Detailed information on CNT30385322


BLAST search results

BLAST vs Swiss-Prot:
sp|P31093|PSAN_HORVU, E-value = 1e-11

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30180208Triticum turgidumSecale cereale34.0227.5593.97116forward
CNT30221417Triticum turgidumHordeum vulgare44.5725.1796.05152forward
CNT30436158Triticum turgidumAegilops tauschii45.1651.6899.35154forward
CNT30252158Triticum turgidumAvena sativa41.9437.4391.61143forward
CNT30658022Triticum turgidumTriticum dicoccoides47.2159.63100161forward
CNT30137831Triticum turgidumLolium perenne40.1831.7991.97137forward
CNT304621Triticum turgidumZea mays18.4820.3990.4863forward
CNT30680985Triticum turgidumTriticum urartu74.78100100255forward
CNT30349480Triticum turgidumEragrostis tef18.7726.1293.7564forward

Expression of CNT30385322

Peptides detected in this lncRNA

>peptide 1 (32 aa)
APDHAQKSSKSPVRNEQRTDGDREGRKQSGPC*

>peptide 2 (69 aa)
MSNEPTATGKEGNRADLVELALLEVLVEDACPGRPGGGREAPTAGPWPGRPARALPPPARRTAAPPRRA*

Sequence

>CNT30385322
GCTCCTGATCACGCGCAAAAATCATCAAAAAGTCCGGTGAGAAATGAGCAACGAACCGACGGCGACAGGGAAGGAAGGAAACAGAGCGGACCTTGTTGAG
CTTGCTCTTCTCGAGGTACTCGTCGAAGACGCTTGCCCTGGCCGACCCGGCGGAGGCCGAGAAGCGCCGACCGCCGGTCCTTGGCCGGGGCGACCTGCAC
GCGCTTTGCCGCCGCCGGCGAGGCGGACTGCGGCACCGCCGCGGCGGGCTTGAGGCCGACCACACTGGTGTTCACGCCGGCCATGATCCTCTCGAGGTTT
TCTTGATGAATCTGGTGTGTGTGCGTGTGTGTGGCCTCAGG