Detailed information on CNT30385182


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT002444, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676994Triticum turgidumSetaria viridis99.7580.5694.78402reverse complement
CNT30381505Triticum turgidumManihot esculenta46.1563.9290.86186reverse complement
CNT30612440Triticum turgidumArabis alpina57.57103.1192.67232reverse complement
CNT30369364Triticum turgidumOryza glumipatula27.0526.298.17109reverse complement
CNT3056240Triticum turgidumAmborella trichopoda63.2889.1694.12255reverse complement

Expression of CNT30385182

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPAHSSTGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHG

>peptide 2 (54 aa)
MSSQLLRLNAFRGEPASSGLEWHFTPNHNSSADSSTSVGSDLCLVSSKLHPGHG*

>peptide 3 (44 aa)
MSRRLILQQARGQRSLSPPTAWELSTVSRSISLPTGGSFHLSLTV

Sequence

>CNT30385182
AGATGTCCAGTCAACTGCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTAGAGTGGCATTTCACCCCTAACCACAACTCATCCGCTGA
TTCTTCAACATCAGTCGGTTCGGACCTCTGCTTAGTTTCATCCAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTGACAA
TCGCCCTATTAAGACTCGCTTTCGCTACGGCTCCGGTGGGTTCCGTTCCCTTAACCAAGCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACG
CGGTCAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTGGGGGTTCTTTTCACCTTTCCCTCACG
GTT