« Back to Triticum turgidum search


Detailed information on CNT30385170


BLAST search results

BLAST vs Swiss-Prot:
sp|Q36284|NU5M_MAIZE, E-value = 1e-102

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30197509Triticum turgidumPisum sativum36.9622.8595.19520forward
CNT30182368Triticum turgidumSecale cereale98.6568.4499.51388forward
CNT30467405Triticum turgidumSaccharum spontaneum99.1586.0697.281395forward
CNT30627916Triticum turgidumDaucus carota36.7414.3395.74517forward
CNT30427311Triticum turgidumPapaver somniferum47.0517.9892.9662forward
CNT30574574Triticum turgidumVitis vinifera35.891595.84505forward
CNT30104639Triticum turgidumOryza rufipogon71.5791.7196.231007forward
CNT30115468Triticum turgidumOryza nivara97.8739.8996.881377forward

Expression of CNT30385170

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKDDLESTQEDRESHIREKVTNGVEPSNIAKA*

>peptide 2 (30 aa)
MHFLQSVMEPSSAPPGQKKRTEQPEAKSRV*

>peptide 3 (90 aa)
MVGAANSDSARISFFGSTKGELAQKLDRGKDAAGCRRLIQVPPEPREMVAYYTAHKLCLGWGYLLFVGGTYGARRASVCCMDCLCISYRV*

>peptide 4 (49 aa)
MRREGSRGLSRRSLFPIHPEGFFPSLAPSSYPVLLSAQPYLFISFFYMEI

>peptide 5 (41 aa)
MELNQVTLQRHNDSRIHFEVDLFARPIVGMCMRYHKGPISQ*

>peptide 6 (35 aa)
KKKEEKELGVGAYITGSLLTKPSWQAPTVLLLLLT*

Sequence

>CNT30385170
CAAAAAGAAAGAAGAGAAAGAACTGGGAGTTGGCGCCTACATAACAGGTAGCTTGCTTACCAAGCCGTCCTGGCAAGCTCCTACAGTTCTCTTATTACTC
TTGACTTGACTTATTAATAAGAAAACTACTCACTAACAAAATGAAAGACGATCTAGAATCTACCCAAGAAGATAGAGAGTCCCACATACGAGAAAAGGTC
ACAAATGGAGTTGAACCAAGTAACATTGCAAAGGCATAATGATAGTAGGATCCACTTTGAAGTTGACTTATTCGCTCGGCCAATCGTCGGAATGTGTATG
AGATACCATAAGGGCCCAATATCTCAATAGCACCCTTGTCTAAAGCTTCGAATGAGACTGAATATCCGAAACGCAGGAACGATCTGACTAGAAAGTCATT
CAAAACTTGATCGAAGAACCAGCGTTTATTGAAGAAGCTATAGAGTCGATTACAAAACGTACTAGTTTGAAAGGCTCGTTGGAATTGATCCGCTACGAGA
TTTACATTATACGCTAGAGAAGCACCTGAAGTACTAAACAGAATAGGTATTAGTTTTGTAATGGTTGGGGCAGCAAACTCGGATTCGGCAAGAATCTCAT
TTTTTGGTAGTACAAAGGGGGAATTGGCCCAAAAATTGGATAGGGGTAAAGACGCAGCCGGGTGCCGGCGGCTTATTCAAGTGCCCCCCGAACCGCGCGA
AATGGTCGCCTATTACACGGCTCACAAACTCTGCCTGGGGTGGGGCTACCTATTATTCGTAGGCGGTACGTACGGCGCACGCAGGGCCTCGGTTTGCTGC
ATGGACTGTCTATGCATTTCCTACAGAGTGTAATGGAACCCAGCTCAGCTCCGCCGGGCCAAAAGAAAAGAACAGAACAGCCGGAGGCGAAGAGTAGAGT
ATAGCCAAGGGGCTTTCGTCGTCCGTAAAGGACCTAACGGAAGACCGTGCTCCGAAGTGTGCACTTCGAGTTTTGTTTTAAGAACACTTGGCCTTACCCC
TTCATTTTGAGCCATGTCTAGGTAGAATTGGCAAGATTGAACCGAGGCCCGCCCGGGCACCGCCGGGGGCAACCAGACCAACCAGTAGGCTTTCTTTCCG
AAGTTTCCTCCCGGGGCCCTTAAATCATTGAATTCATAGGCATAGGGGCGTCCCAGGCAGTGGTTCATTCAATGAGAAAGAAAGACAGGAGGGCAGGATT
CGTCGTGTCGGGCTAATTCATTCTGGGAAAAAAGGGGGAAGGGAGTCACCTGAGCTATGCGAAGGGAAGGAAGTCGTGGGCTGAGCCGGAGGTCACTTTT
CCCGATCCATCCCGAAGGGTTTTTTCCCTCTCTCGCCCCATCATCGTACCCAGTCCTGCTATCGGCTCAGCCCTATCTATTCATCTCTTTTTTTTACATG
GAGATTT