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Detailed information on CNT30385102


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FEQ8|PER2_MAIZE, E-value = 4e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT301235Triticum turgidumZea mays54.0938.5178.89469forward
CNT30595986Triticum turgidumOryza meridionalis29.6426.8584.82257forward
CNT30100585Triticum turgidumOryza rufipogon40.3773.3881.14350forward
CNT30116322Triticum turgidumOryza nivara69.250.1783.83600forward

Expression of CNT30385102

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MSEGVLRRSETKDEQWERPMVCAPERTTRSSVLRPLMTKLATRSLRLDVGGARNLSGSEALEKVPSRRPDGIWKFTLPLLRMQDASRAAKATMS

>peptide 2 (67 aa)
MARQFFLIWPWWPVLTSMPAIFTMAFSNLSSHHPGILAFSTTILAVSTEVMSAASEVKSTVCDNTFL*

>peptide 3 (41 aa)
FILSTKNIGSQLDPHNPIYTNSSVALARIEPRNNQRKKGTQ*

Sequence

>CNT30385102
CTTTTATTCTTTCAACAAAGAACATTGGTTCACAATTAGACCCGCACAACCCCATATACACGAACAGTTCTGTAGCTTTGGCTAGAATTGAACCAAGGAA
TAACCAAAGAAAAAAAGGCACGCAGTGAAAGAATCGCCAAATTTTACAACATGAACTCGCTTGCAGGTTGAAGCAAACAATCGCCAAATTTTACCATGCA
TGCACACGTACGTACGTGCGCAGCTGCTGCACTACGTACGTACTCCATTTATTAGTAGTGGTTGATGGCGCGGCAGTTCTTCCTGATCTGGCCCTGGTGG
CCGGTCTTGACCTCGATGCCGGCCATCTTCACCATGGCCTTCTCGAACCTGTCCTCCCACCATCCGGGGATTTTGGCGTTCTCCACCACCATCCTCGCCG
TCTCCACCGAAGTCATGAGCGCCGCGTCGGAGGTGAAGAGCACCGTGTGCGACAACACGTTCTTGTAGTACTGCCTGTCCAGCTTGTTGGGCGTCACCAC
GTCCTGCATCACCGTCGGGTCGTTGCCGCCCGGCGTCGCGTCGGCCGGGCACTGTCCCCTCAGGAACGCGGCGAGGCCGCCGTTGATGTCGGAGGGGGTG
TTGAGGCGGTCGGAGACGAAGGACGAGCAGTGGGAACGCCCGATGGTGTGCGCGCCAGAGAGGACGACCAGGTCCTCCGTGTTGAGGCCCTTGATGACGA
AGCTAGCGACGAGGTCGCTGAGGTTGGACGTCGGCGGCGCCAGGAACTTGAGCGGCTCGGAGGCGTTGGAGAAGGTGCCGTCGCGGCGGCCGGACGGCAT
CTGGAAGTTTACCTTGCCCCTGCTGAGGATGCAGGATGCGTCACGGGCCGCAAAGGCGACGATGTCA