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Detailed information on CNT30384972


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONVVIT003033, E-value = 4e-180

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30637481Triticum turgidumCapsicum annuum47.1765.1896.58292reverse complement
CNT3094274Triticum turgidumSolanum tuberosum34.2571.8698.58212forward
CNT30508923Triticum turgidumSolanum lycopersicum48.6390.1298.34301reverse complement
CNT30554477Triticum turgidumOryza glaberrima62.5253.5398.45387forward
CNT30258490Triticum turgidumAvena sativa59.1350.6999.18366reverse complement
CNT30202530Triticum turgidumHelianthus annuus93.3878.8597.58578reverse complement
CNT30369921Triticum turgidumOryza glumipatula36.6798.799.12227reverse complement
CNT30484247Triticum turgidumChara braunii21.169.4190.84131forward
CNT30320583Triticum turgidumAsparagus officinalis43.1324.34100267reverse complement
CNT30118993Triticum turgidumCitrus clementina44.177.5694.14273reverse complement
CNT3099471Triticum turgidumOryza rufipogon30.8675.79100191forward
CNT3019347Triticum turgidumCyanidioschyzon merolae23.15.2386.01143forward

Expression of CNT30384972

Peptides detected in this lncRNA

>peptide 1 (30 aa)
SFSTRSLHTSRCLHLSPIEVLFKNLVRELV*

>peptide 2 (60 aa)
RLVRDRFTPRGAYTSRLSKFCSKTSYENLYREGFPAAQQFFHTNLAARRCYWHNNRYTIG*

>peptide 3 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNQRLSLPSHTSVTL*

Sequence

>CNT30384972
TTCGTTTAGTACGAGATCGCTTCACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTTCTGTTCAAAAACCTCGTACGAGAACTTGTATAGAGAAGG
ATTTCCCGCGGCGCAGCAGTTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGACCCAGCCCAGTCCTC
TCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTT
TCATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCGATAAGAGCTCTTGGG
AGTCATCAGCCTGTTATCCCCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGGACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTC
GACCAGTCGGTCTCACAGTCAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCAACGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAG
GCATCCGCCCCAGATAAAC