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Detailed information on CNT30384830


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Triticum turgidumSetaria viridis65.2594.3397.65383reverse complement
CNT30294119Triticum turgidumTriticum aestivum46.3499.6398.16272reverse complement
CNT30220355Triticum turgidumHordeum vulgare49.0696.3298.61288forward
CNT30657980Triticum turgidumTriticum dicoccoides68.3198.2898.25401reverse complement
CNT30331560Triticum turgidumDioscorea rotundata29.9834.8594.89176forward

Expression of CNT30384830

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MSALSSDFPRASGITAETATGSPPIRGWSYRSMEIG*

Sequence

>CNT30384830
TAGTGATCCGACGGTGCCGAGTGGAAGGGCCATCGCTCAACGGATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGAGTCCACATCGACGGG
AAGGTTTGTCACCTCGATGTCGGCTCTTCGCCACCTGGAGCTGTAGGTGGTTCCAAGGGTTGGGCTGTTCGCCCATTAATGCGGTACGTGAGCTGGGTTC
AGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTTCGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGG
TGTACCAGTTATCGTGCCTACGGTAAACGCTGGGTAGCCAAGTGCGGAGAGGATAATTGCTGAAAGCATATAAGTAGTAAGCCCACCCCAAGATGAGTGC
TCTCTCCTCCGACTTCCCTAGAGCCTCCGGTATCACAGCCGAGACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCTACAGAAGTATGGAAATAGGA
TAAGGTAGCGGCGAGACGAGCCGTTTAAATAGGTGTCAAGTGGAAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACAAACGAACG