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Detailed information on CNT30384527


BLAST search results

BLAST vs Swiss-Prot:
sp|P01053|ICI2_HORVU, E-value = 1e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30697502Triticum turgidumOryza sativa47.1539.1282.26124forward
CNT30286709Triticum turgidumTriticum aestivum33.8413.6988.7689reverse complement
CNT30555553Triticum turgidumOryza glaberrima36.515.8983.3396forward
CNT30248526Triticum turgidumAvena sativa29.6611.9485.978reverse complement
CNT30720257Triticum turgidumTriticum spelta33.8417.9488.7689reverse complement
CNT30578432Triticum turgidumOryza barthii36.521.1983.3396forward

Expression of CNT30384527

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MEGVVAMVLTMMRTQLVLKLRVIAEPAGRTSMSASGMSLRMISLASSMDFPTTSGHDVFFSSP

>peptide 2 (32 aa)
IETTYSSACIMHLCCLSLEKLASQWKEWSQWC*

Sequence

>CNT30384527
TATTGAAACAACTTATTCATCAGCATGCATAATGCATCTATGTTGCCTCTCGCTCGAAAAGCTAGCTAGCCAATGGAAGGAGTGGTCGCAATGGTGTTGA
CGATGATGCGGACACAGTTGGTCCTGAAGTTGAGGGTCATCGCCGAGCCAGCAGGAAGGACGTCGATGTCGGCGTCAGGCATGTCCTTAAGGATGATCTC
CTTGGCCTCCTCAATGGACTTCCCCACTACCTCCGGCCATGACGTCTTCTTCTCCTCTCCGGC