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Detailed information on CNT30384456


BLAST search results

BLAST vs Swiss-Prot:
sp|P20121|PSAH_PEA, E-value = 1e-16

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693639Triticum turgidumOryza sativa20.1911.2789.81108forward
CNT30673198Triticum turgidumSetaria viridis20.1947.3788.89108forward
CNT30521234Triticum turgidumSetaria italica20.1914.9488.89108forward
CNT30178026Triticum turgidumSecale cereale38.536.9298.54206forward
CNT30285918Triticum turgidumTriticum aestivum35.8940.8598.96192forward
CNT30591852Triticum turgidumMusa acuminata15.720.1484.5284forward
CNT30435366Triticum turgidumAegilops tauschii28.2233.1999.34151forward
CNT30241486Triticum turgidumAvena sativa35.1450.8194.15188forward
CNT30130322Triticum turgidumLolium perenne39.0725.7194.26209forward
CNT30679308Triticum turgidumTriticum urartu39.0731.9199.04209forward
CNT30370255Triticum turgidumOryza glumipatula20.1916.9589.81108forward
CNT30149479Triticum turgidumBrachypodium distachyon32.7145.4590.86175forward
CNT30101773Triticum turgidumOryza rufipogon20.1913.1189.81108forward
CNT30496965Triticum turgidumDigitaria exilis20.1931.7687.96108forward
CNT30116717Triticum turgidumOryza nivara20.1913.1489.81108forward
CNT30604129Triticum turgidumOryza punctata20.1917.2288.89108forward

Expression of CNT30384456

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MIYSNCMHHACSIFPITDTKYNDQVSTEA*

Sequence

>CNT30384456
TAGGTGTGCAGCTGTGCACGTAGAGCCGTGAGTAGGCCGGCCGGACAATACGTATTGGCTAGAGTGACATAAACCAAAGGGGGAGAACTATAGATCGGCA
CTGTACCCTCTAGACAAGTAGAGTAATTTAAATCGCCAGTATGGCCTAAACATGGTACAAAAACCAGTACGTAGCAATCATCAAAGAGCAAATGATCTAC
AGTAATTGCATGCATCATGCATGCAGCATCTTTCCAATTACTGATACGAAGTACAACGATCAAGTATCAACAGAAGCATAGATAGAGGGGAATCCATCAG
ATCCATGGTACACAAGCACGAGCCGAGCCGAGCAGCAGGACCTTGAGCAGCAGCCCGCGCTTGGTGAAGGGCGCGGCGAAGGTGTTGAAGAACTTGCTCT
GCAGGCCGTTGTAGGGCGACGCGGCGTCGCTGCCGTACAGGTCCCACTGCCCCGTCGTGTTGGCGATGTCGTCCAGGTCGAAGTAGACGCTCTTCTCCCC
GTACTTGGCCACCACCGCCGCCCCGCGAGCCCTGC