« Back to Triticum turgidum search


Detailed information on CNT30384303


BLAST search results

BLAST vs Swiss-Prot:
sp|P20143|PSAH_HORVU, E-value = 9e-39

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693799Triticum turgidumOryza sativa10.9120.587.8866forward
CNT30220389Triticum turgidumHordeum vulgare17.5224.2698.11106forward
CNT30656375Triticum turgidumTriticum dicoccoides51.480.57100311forward
CNT30720193Triticum turgidumTriticum spelta35.0438.8390.09212forward
CNT30576447Triticum turgidumOryza barthii10.5821.3387.564forward

Expression of CNT30384303

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MIYSNCMHHACSIFPITDTKYNDQVSTEA*

>peptide 2 (36 aa)
MGSRSGEAVALTTLSSSPRLVKGAAKVLKNLLCRPL*

Sequence

>CNT30384303
TAGGTGTGCAGCTGTGCACGTAGAGCCGTGAGTAGGCCGGCCGGACAATACGTATTGGCTAGAGTGACATAAACCAAAGGGGGAGAACTATAGATCGGCA
CTGTACCCTCTAGACAAGTAGAGTAATTTAAATCGCCAGTATGGCCTAAACATGGTACAAAAACCAGTACGTAGCAATCATCAAAGAGCAAATGATCTAC
AGTAATTGCATGCATCATGCATGCAGCATCTTTCCAATTACTGATACGAAGTACAACGATCAAGTATCAACAGAAGCATAGATAGAGGGGAATCCATCAG
ATCCATGGTACACAAGCACGAGCCGAGCCGAGGCGAGGCGAGGCGAGAGGAGGAAGAAGGCTTTGATTGCAGATCTACTTAGATCTTGCCGCGTGGTCCC
GGGGTGGGCGGCAGCTGGGGCCCCTTCTTGATGGGGAGCAGGTCGGGGGAGGCGGTGGCGCTGACGACCTTGAGCAGCAGCCCGCGCTTGGTGAAGGGCG
CGGCGAAGGTGTTGAAGAACTTGCTCTGCAGGCCGTTGTAGGGCGACGCGGCGTCGCTGCCGTACAGGTCCCACTGCCCCGTCGTGTGGGATCCCAAGAA
GGGGC