Detailed information on CNT3038429


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30693247Cucumis meloOryza sativa25.2411.2783.7580forward
CNT30522232Cucumis meloSetaria italica32.1810.2384.31102forward
CNT30701275Cucumis meloQuercus lobata21.4511.7991.1868forward
CNT30710762Cucumis meloGlycine max41.9639.1284.96133forward
CNT30164816Cucumis meloPistacia vera22.0834.319070forward
CNT30592165Cucumis meloMusa acuminata33.7538.0885.98107forward
CNT30553602Cucumis meloOryza glaberrima25.2417.2483.7580forward
CNT30172855Cucumis meloTrifolium pratense41.0115.8286.15130forward
CNT30610520Cucumis meloGossypium raimondii36.5913.9387.93116forward
CNT30362130Cucumis meloSorghum bicolor32.1830.7284.31102forward
CNT3052558Cucumis meloAmborella trichopoda34.726.781.82110forward
CNT30575951Cucumis meloOryza barthii25.2418.4383.7580forward
CNT30113199Cucumis meloFicus carica28.0820.4189.8989forward
CNT30333083Cucumis meloCynara cardunculus43.2237.1382.48137forward
CNT30726195Cucumis meloLupinus angustifolius37.2219.8388.98118forward

Expression of CNT3038429

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MLHTLLSLYALAPSNSPPSIIEELFRPFNPPASPLRSPRYLCSLITKMSKFSTTIRQLQD*

>peptide 2 (43 aa)
KCYAGFLVISPVELLHSEHVAYFAVLVCLGPIKLTTVNHRRAV*

Sequence

>CNT3038429
CAAATGTTATGCCGGTTTCCTCGTGATATCGCCTGTGGAACTCTTGCATAGTGAGCATGTTGCATACTTTGCTGTCCTTGTATGCCTTGGCCCCATCAAA
CTCACCACCGTCAATCATCGAAGAGCTGTTTAGGCCGTTTAATCCTCCAGCAAGTCCTCTAAGGTCACCAAGGTATTTGTGTTCCCTGATCACGAAAATG
TCAAAATTTAGCACAACAATAAGGCAATTACAAGACTGAGCACAACCACAAACAATAGAATGTACCGGTAATCGATCCGACAATGATGAGACGTTTTGAG
GGGTAATCAGATTTGTT