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Detailed information on CNT3038420


BLAST search results

BLAST vs Swiss-Prot:
sp|P93276|M030_ARATH, E-value = 3e-34

BLAST vs NONCODE:
NONCQUT002726, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696398Cucumis meloOryza sativa16.8149.997.08240forward
CNT30671914Cucumis meloSetaria viridis34.129.2896.92487forward
CNT30640799Cucumis meloNymphaea colorata46.6487.5288.89666forward
CNT30619000Cucumis meloSesamum indicum65.1330.4495.48930forward
CNT30730372Cucumis meloCorchorus capsularis68.0750.2396.3972forward
CNT30490117Cucumis meloOlea europaea65.0676.0994.29929forward
CNT30505422Cucumis meloNicotiana attenuata68.1436.5796.3973forward
CNT30712870Cucumis meloGlycine max57.9149.7694.56827forward
CNT30157615Cucumis meloPistacia vera31.8661.9995.16455forward
CNT3092080Cucumis meloSolanum tuberosum18.2844.7798.08261forward
CNT30181978Cucumis meloSecale cereale47.3476.4797.34676reverse complement
CNT30300122Cucumis meloTriticum aestivum47.3431.3497.04676forward
CNT30221603Cucumis meloHordeum vulgare47.2756.0296.59675forward
CNT30592527Cucumis meloMusa acuminata13.2456.5998.41189forward
CNT30543268Cucumis meloBrassica napus47.3429.4697.04676forward
CNT30511493Cucumis meloSolanum lycopersicum21.2233.8998.02303reverse complement
CNT30147386Cucumis meloMedicago truncatula67.0962.1396.76958forward
CNT30435868Cucumis meloAegilops tauschii47.3448.4997.34676forward
CNT30242955Cucumis meloAvena sativa21.532.998.37307forward
CNT3082633Cucumis meloBrassica juncea22.0695.7496.51315forward
CNT30140120Cucumis meloLolium perenne47.3420.3697.34676forward
CNT30605266Cucumis meloGossypium raimondii61.4841.9594.99878forward
CNT30207637Cucumis meloHelianthus annuus68.3549.995.29976forward
CNT30689137Cucumis meloTriticum urartu47.3456.1996.45676forward
CNT30364089Cucumis meloSorghum bicolor14.2944.9391.67204forward
CNT30595572Cucumis meloOryza meridionalis18.7731.2797.01268forward
CNT30360996Cucumis meloLactuca sativa68.2866.8396.82975forward
CNT30434643Cucumis meloPapaver somniferum43.3583.293.7619forward
CNT3057903Cucumis meloAmborella trichopoda47.3428.2193.2676reverse complement
CNT30108930Cucumis meloOryza longistaminata47.3428.8997.19676forward
CNT30331546Cucumis meloDioscorea rotundata18.0761.8791.86258reverse complement
CNT30550626Cucumis meloOryza brachyantha16.4680.288.94235reverse complement
CNT30113381Cucumis meloFicus carica31.58101.1292.02451reverse complement
CNT30335929Cucumis meloCynara cardunculus9.7337.6794.24139forward
CNT30725732Cucumis meloLupinus angustifolius18.8459.6595.91269forward

Expression of CNT3038420

Peptides detected in this lncRNA

>peptide 1 (50 aa)
MTTRRWAWKQPSFEESVIAHWSSSMAPKMSRGSSDSPKRRDLESSFFKCQ*

>peptide 2 (30 aa)
MMSMARGRALNGLGWPHFALPTPGKLRIQA*

>peptide 3 (43 aa)
KRMHWMDARALRRKDAFRGERPWGDLVCDPWISDRETVSKLRG*

Sequence

>CNT3038420
AAAAGAATGCATTGGATGGATGCCCGGGCATTGAGAAGGAAGGACGCTTTCAGAGGCGAAAGGCCATGGGGAGATCTCGTCTGTGATCCATGGATCTCCG
ATCGGGAAACCGTATCCAAGCTCCGTGGCTAGTCTGCGCTCTTTGGACTTTTCAAACTTAGCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCA
ACCGAGACCCCGTTAGTAGCGGCGAGCGAGAGCGGATTGGGGGTTTTCAGAAAAAGAAAGACGAGGCTTTGTTCATTGACTGAAGTCGATCTTCTTCGAA
CCGCTCCGTGGGGTCGAGCGAGTTCCTCAGCAAAGTGTGAACGTGAACTTCTTTTTCTTTTTCGCCAGGTTTCATTCGATTTGTTGTGGATTGGATGATG
GAAAAACCAGCAAGCCGCTTGACCTTTCATACGAGGTCAAGGGTCAAAGAATTTGAGTTGTGAAAAGGTTGGAAGATCTGGCCAAAGAAGGTGATAGCCC
TGTAGATTCGTTCCCATGGTTCGATCCTTCCCAGTCAAACGCGGCGTGTTCGAATTCTGATCGCTTTTACGCGAGAAAGGGGGACCACCCTCTAAGCCTA
AGTATTCCTCAATGACCGATAGCGTACAAGTACCGTGAGGGAAAGGTGAAAAGAACCCTATTTAGGGAGTGCAATAGAGAACCTGAGATCCGATGCTTTC
AATCAGTCGAAGGAGCGGCAAGCCTTGACTTGAGATTCTCTTAGTCAAGCTATCTCACTCTAACGGCGTACCTTTTGCATGATGGGTCAGCGAGAAAATG
GGAACTGCGGCTTAAGCCATTAGGTGTAGGCGCTTTCCAGAGGTGGAAGATTCTCGTTCTTCCTATTTGACCCGAAACCGATCGATCTAGCCATGAGCAG
GTTGAAGAGAGCTCTAACAGGCCTTGGAGGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCCAACCAAGATCGG
ATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGTATGATGTCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTA
CCAACCCCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTACAGACAGACTTTTGGGGTGCTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGT
ACGCTAAGGTCCCTAAGCAATCACTTAGTGGAAAAGGAAGTTCTCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGCAGCCATCCTTTGAAGAAAGCGT
AATAGCTCACTGGTCTAGCTCCATGGCACCGAAAATGTCTCGGGGCTCAAGTGATTCACCGAAGCGACGAGACCTTGAAAGCAGCTTTTTCAAGTGTCAG
TAGCGGGACGTTCTGTCAATCGGGGAAG