Detailed information on CNT30384181


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006943, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674625Triticum turgidumSetaria viridis40.4992.9697.73264forward
CNT30511396Triticum turgidumSolanum lycopersicum78.0755.6389.78509reverse complement
CNT30257732Triticum turgidumAvena sativa41.72100100272forward
CNT30266045Triticum turgidumBrassica rapa48.7771.7898.43318reverse complement
CNT30715515Triticum turgidumMalus domestica golden27.1588.0684.18177reverse complement
CNT3039583Triticum turgidumMarchantia polymorpha37.4260.2593.03244forward

Expression of CNT30384181

Peptides detected in this lncRNA

>peptide 1 (59 aa)
AHSSRGTRSEITFPSHCLGAQHGFTFYFTTHWGFFSPFPHGTTSLSVTQEYLALQGGPC*

>peptide 2 (52 aa)
RLILQEARGQRSLSPPTAWELSTVSRSISLPTGGSFHLSLTVLLRYRSPRSI*

>peptide 3 (75 aa)
GSFFKRHAVRDHFPLPLLGSSARFHVLFHYPLGVLFTFPSRYYFAIGHPGVFSLARWSLLIHTGFHVPHATRVRA*

>peptide 4 (72 aa)
MFQFARLSLACSWIQQAFKRLTYLGISGSMLIFNSPKHFVACYALPRLWVPRYPPQAFPLLNLAINVKAMPS*

Sequence

>CNT30384181
CGGCTCATTCTTCAAGAGGCACGCGGTCAGAGATCACTTTCCCCTCCCACTGCTTGGGAGCTCAGCACGGTTTCACGTTCTATTTCACTACCCACTGGGG
GTTCTTTTCACCTTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTTAGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACG
TGCCCCATGCTACTCGGGTCAGAGCGTAAGCTAGTGATGCTTTCGGCTACTGGACTTTAGCCATCTAGGGTGCGGCACTCAACCGCTTCGCCTAGCAGCA
CAACGCTTGTATTGCTCTCCCACAACCCCGTTTTCACGGTTTAGGCTGCTCCCATTTCGCTCGCCACTACTACGGGAATCGCTTTTGCTTTCTTTTCCTC
TGGCTACTAAGATGTTTCAGTTCGCTAGGTTGTCTCTTGCCTGCTCATGGATTCAGCAGGCATTTAAAAGGTTGACCTATTTGGGAATCTCCGGATCTAT
GCTTATTTTCAACTCCCCGAAGCATTTCGTCGCTTGCTACGCCCTTCCTCGTCTCTGGGTGCCTAGGTATCCACCGCAAGCCTTTCCTCTTTTGAACCTC
GCCATTAACGTTAAGGCTATGCCATCCTAAGGTGCTACTAAATGGAAGGATC