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Detailed information on CNT3038372


BLAST search results

BLAST vs Swiss-Prot:
sp|P17598|CATA1_GOSHI, E-value = 3e-170

BLAST vs NONCODE:
NONGMAT001767, E-value = 5e-42

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30640190Cucumis meloNymphaea colorata16.5521.1481.87182forward
CNT30516671Cucumis meloJuglans regia32.3676.0784.55356forward
CNT30377107Cucumis meloArabidopsis thaliana37.5587.3282.81413forward
CNT30501026Cucumis meloCoffea canephora44.5532.0978.16490forward
CNT30616919Cucumis meloSesamum indicum17.2758.8281.05190forward
CNT30282683Cucumis meloChenopodium quinoa33.2739.7480.6366forward
CNT3021611Cucumis meloCitrullus lanatus32.1889.1793.5354forward
CNT3070085Cucumis meloQuercus suber22.5538.0483.47248forward
CNT30380803Cucumis meloManihot esculenta26.0961.1983.62287forward
CNT30405510Cucumis meloBeta vulgaris18.9144.2681.73208forward
CNT30526368Cucumis meloPhaseolus vulgaris32.2722.379.44355forward
CNT30708912Cucumis meloGlycine max34.8243.9780.94383forward
CNT3046375Cucumis meloPrunus dulcis55.4587.3984.26610forward
CNT30638211Cucumis meloCapsicum annuum29.2757.7182.61322forward
CNT3098566Cucumis meloSolanum tuberosum1032.3585.45110forward
CNT30305192Cucumis meloTriticum aestivum42.8286.978.98471forward
CNT30563752Cucumis meloActinidia chinensis30.8269.6183.19339forward
CNT3085325Cucumis meloVigna radiata28.2743.9984.57311forward
CNT30668770Cucumis meloTriticum dicoccoides49.2770.7679.15542forward
CNT30313019Cucumis meloCamelina sativa14.7326.4781.48162forward
CNT3080335Cucumis meloBrassica juncea15.0929.2880.72166forward
CNT30260467Cucumis meloBrassica rapa17.0945.0882.98188forward
CNT30475173Cucumis meloSaccharum spontaneum62.4592.4678.31687forward
CNT30654455Cucumis meloRosa chinensis3379.4382.09363forward
CNT30715065Cucumis meloMalus domestica golden6348.7383.12693forward
CNT30624536Cucumis meloDaucus carota20.0915.7385.07221forward
CNT30687547Cucumis meloTriticum urartu17.5585.0282.9193forward
CNT30478285Cucumis meloArabidopsis halleri1341.3380.42143forward
CNT30370393Cucumis meloOryza glumipatula10.1847.6685.71112forward
CNT30154060Cucumis meloPrunus persica58.3663.9482.55642forward
CNT30574555Cucumis meloVitis vinifera32.0942.6880.17353forward
CNT30704833Cucumis meloPrunus avium39.7361.283.75437forward
CNT3022395Cucumis meloPopulus trichocarpa25.8269.184.15284forward
CNT30576697Cucumis meloOryza barthii15.4539.1782.94170forward
CNT3050211Cucumis meloCucumis sativus32.6495.4896.66359forward

Expression of CNT3038372

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MVRKEVKDSPILLNVGLGIRFESMYHVWKFHTITDEKYREVVAHKIKIALIVKGRFKFVLP*

>peptide 2 (50 aa)
MAGQKASCSFSAKKLSMFLFKTKRPTGCKGKISSGQVLVTSRGSKSYLSS*

>peptide 3 (36 aa)
MWDLGFGLRACTMSGNFIPSRMKNTGKLLPTRSKLP*

>peptide 4 (45 aa)
MAVITSSNTNSFFLQQGLDSTGRPPVKFHIVCFPCFVNQSIGVNT*

>peptide 5 (31 aa)
NSRWLRIPLGMEVGDSLVQDDASEYLRRRRS*

Sequence

>CNT3038372
AACAGCAGGTGGTTGAGGATACCTCTCGGCATGGAAGTTGGAGATAGTTTGGTCCAAGACGATGCCTCTGAGTATCTGCGTAGGAGAAGATCCTAGTTTG
AAGCAATTTGTCATCTGAATAGTATATTCCAGGTACTATAATGGCAGGACAAAAGGCCAGTTGTTCATTCTCTGCAAAGAAGTTATCGATGTTCTTATTC
AAAACCAAGCGGCCAACTGGCTGCAAGGGCAAGATATCCTCGGGCCAAGTCTTGGTTACATCTAGAGGGTCAAAGTCATATCTATCTTCATGATCAGGGT
CAATAGTCTGAATGAAGAGCTTCCACTCAGGGTAGTTGCCAGCCATAATTGAATCATACAGGTCCTGAGTGGCATGGCTGTGATTACTTCCTCCAACACG
AATAGCTTCTTCCTCCAGCAAGGACTTGACTCCACAGGTAGGCCTCCAGTGAAATTTCACATAGTGTGCTTTCCCTGCTTTGTTAATCAGAGTATAGGTG
TTAACACCTGAACCGTCCATGTGCCTGTAATCTTGTGGGATACCAATATCATCAAATAGGAATGTGAACATGTTCAAACTTTCGGGATGGTGAGAAAAGA
AGTCAAGGATTCTCCAATTCTCCTGAATGTGGGACTTGGGATTCGGTTTGAGAGCATGTACCATGTCTGGAAATTTCATACCATCACGGATGAAAAATAC
AGGGAAGTTGTTGCCCACAAGATCAAAATTGCCCTGATAGTTAAAGGTCGATTCAAATTTGTATTACCATGAGTCGCATAAACAAACCATAAAGAAAGCG
TGACTTTACATTTGAACAAAAGAAAAGATGCACAAAAGATGCAAATTCTATTCCAGCAAAAATATAGTATATTTCGTACTTCTGGATGATAAAACGTGAC
TAATAGGCAAATGGACGTAGTAAAAGTGCAGCCTAAAAAGTAATGCAATAGGCATGGACCAAGTTAAAGGAGTACAAAAGACAAGCCAGTTACTCTTATC
ACAACAATTGCATTCTTATGCTTCTTTGAATTAGGAATGCCAGAATTGTTGTAGCAATAAATTATGTGCAACCAAAAAAGCATAAACAAATAAAACTCTC