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Detailed information on CNT30383650


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76H85|H4_SILLA, E-value = 1e-45

BLAST vs NONCODE:
NONGMAT001327, E-value = 3e-40

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30283432Triticum turgidumTriticum aestivum37.3168.4499.44360forward
CNT30434720Triticum turgidumAegilops tauschii37.169.6596.93358forward
CNT30655811Triticum turgidumTriticum dicoccoides37.168.4599.72358forward
CNT3082467Triticum turgidumBrassica juncea26.0135.0182.47251forward
CNT30679384Triticum turgidumTriticum urartu45.3972.2899.77438forward
CNT3024855Triticum turgidumPopulus trichocarpa27.0544.4680.84261forward

Expression of CNT30383650

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MRVALFHDSLGTTEEVANHTSRGIIKLLGSAGEGRGSA*

>peptide 2 (29 aa)
MSPEMRFTPPLRARRRIAGLRVRPWRLRA*

>peptide 3 (84 aa)
MYAMQTKSISITALHNRRNTNSAQCCTTKYDLSASTDKIYLLQSAHNFALQKKQQSHTNRDIAGQPARQNSETRCILISNSRCE*

>peptide 4 (68 aa)
TNQSKTGCMQCRQNPSQLQRCTTEGTPILPSVAQPSTICRRLLIKSTYSRAHTILHYRRNSNRTQTEI*

>peptide 5 (73 aa)
MRPEMRLTPPLRASLRIAGLVMPWMLSRSTFRWRLAPPLPSPLPPLPRPDMADGLSLVRAASECGIGGAVVVVL

Sequence

>CNT30383650
TAACAAATCAATCTAAGACTGGATGTATGCAATGCAGACAAAATCCATCTCAATTACAGCGTTGCACAACAGAAGGAACACCAATTCTGCCCAGTGTTGC
ACAACCAAGTACGATTTGTCGGCGTCTACTGATAAAATCTACTTACTCCAGAGCGCACACAATTTTGCATTACAGAAGAAACAGCAATCGCACACAAACA
GAGATATAGCAGGCCAACCAGCGAGACAAAATTCAGAAACACGGTGTATATTGATTTCCAACTCCAGATGCGAGTAGCTTTGTTTCACGATTCACTTGGA
ACTACAGAGGAAGTAGCAAACCACACTAGTCGCGGTATCATCAAGCTTTTGGGATCTGCAGGGGAGGGGCGAGGAAGCGCCTAGCCGCCGAAGCCGTAGA
GGGTGCGGCCCTGGCGCTTGAGGGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGTT
CTCGAGGAAGATCTTGAGGACGCCGCGGGTCTCCTCGTAGATGAGCCCCGAGATGCGCTTCACGCCGCCCCTCCGAGCGAGGCGCCGGATCGCCGGCTTG
AGGGTGCGGCCCTGGCGCTTGAGGGCGTAGACGACGTCCATGGCGGTGACGGTCTTGCGGCGGGCGTGCTCGGTGTAGGTGACGGCGTCGCGGATGACGT
TCTCGAGGAAGATCTTGAGCACGCCGCGGGTCTCCTCGTAGATGAGGCCGGAGATGCGCTTGACGCCGCCCCTCCGAGCGAGCCTCCGGATCGCCGGCTT
GGTGATGCCTTGGATGTTGTCGCGCAGCACCTTCCGGTGGCGCTTGGCGCCGCCCTTGCCGAGCCCCTTGCCTCCCTTGCCGCGCCCGGACATGGCTGAC
GGTCTCTCCTTGGTTCGAGCTGCGAGCGAATGTGGGATTGGAGGAGCGGTGGTGGTTGTTTTGTG