Detailed information on CNT30383546


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRB7|TBA_WHEAT, E-value = 4e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517675Triticum turgidumJuglans regia44.5921.8584.85132forward
CNT30611949Triticum turgidumArabis alpina36.4931.2189.81108forward
CNT30689748Triticum turgidumTriticum urartu10097.05100296forward

Expression of CNT30383546

Peptides detected in this lncRNA

>peptide 1 (72 aa)
LRNKPVEVGVCWALNVKGAAADVIDGLIVKKDRHISVLKEGVGGQDTVVWLNNRGAPAEENQGQSQFHLQQR*

>peptide 2 (60 aa)
MASLSRRIDTSVCSRREWVDRTLLYGSTTEALQQKRTKARASSTSNSVEDKESLETSAVV*

>peptide 3 (49 aa)
MAQQQRRSSRREPRPEPVPPPTALKTRNPWRPVQLSESFLIRSRHRSTIS

Sequence

>CNT30383546
CTGAGAAACAAGCCTGTTGAGGTTGGTGTATGTTGGGCGCTCAATGTCAAGGGAGCGGCGGCAGATGTCATAGATGGCCTCATTGTCAAGAAGGATAGAC
ACATCAGTGTGCTCAAGGAGGGAGTGGGTGGACAGGACACTGTTGTATGGCTCAACAACAGAGGCGCTCCAGCAGAAGAGAACCAAGGCCAGAGCCAGTT
CCACCTCCAACAGCGTTGAAGACAAGGAATCCCTGGAGACCAGTGCAGTTGTCTGAAAGCTTCCTGATACGGTCAAGGCACAGATCAACAATCTCC