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Detailed information on CNT30383525


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30434913Triticum turgidumAegilops tauschii55.3950.1387.47375forward
CNT30255044Triticum turgidumAvena sativa23.7837.6295.65161reverse complement
CNT30557095Triticum turgidumPanicum hallii11.9626.4792.5981reverse complement

Expression of CNT30383525

Peptides detected in this lncRNA

>peptide 1 (80 aa)
MSCCGGNCGCGAGCKCGNGCGGCKMFPDVEATAGAAAMVMPTASHKGSSGGFEMAGETGGCDCTTCKCGTACGCSCCSCN*

>peptide 2 (79 aa)
PSILCRPPPGLFIAPLPAFFLLTKHTSLLTPHSILSVLSFLPSPPPTAKEDVLLRRQLRVRRRLQVRQRLRRVQDVPRR*

>peptide 3 (37 aa)
LHPLPPPARPIYSPPPRLLPPHQAHQPPHSSQHPLSP*

Sequence

>CNT30383525
CCCTCCATCCTTTGCCGCCCCCCGCCCGGCCTATTTATAGCCCCCCTCCCCGCCTTCTTCCTCCTCACCAAGCACACCAGCCTCCTCACTCCTCACAGCA
TCCTCTCAGTCCTTAGCTTCCTTCCCTCGCCACCACCCACAGCCAAGGAGGATGTCTTGCTGCGGCGGCAACTGCGGGTGCGGCGCCGGCTGCAAGTGCG
GCAACGGCTGCGGCGGGTGCAAGATGTTCCCCGACGTTGAGGCCACCGCCGGCGCCGCCGCCATGGTCATGCCCACCGCCTCCCACAAGGGGAGCTCCGG
CGGGTTCGAGATGGCCGGGGAGACCGGCGGCTGCGACTGCACCACCTGCAAGTGCGGCACCGCGTGCGGCTGCTCCTGCTGCAGCTGCAACTGAGCCGGC
GCCCAGGAGGCCGGCCGGCGAGGCGAGCACGAGGATGAGGAGAAGCAAGCAATCATCATCACCACCACCCAGCGTATCAGTAGCACTAGCCGCCGCATGC
GCTCGCGCGCGCGCTAAATAAAATAAAACCGTCATGTGTTCCTTAGTTCTGTACGCCTCGCGTGTAGTGTTCGACCAGTGTCCCTCCTCATGCCTCCACT
TCTAATGAATATATGGCGCCTCAACTTTGAACGATCTTGTCTCTGTTGATCTGTTCTCCAACTGTGTCTGAATCGGA