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Detailed information on CNT30383400


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000045, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730599Triticum turgidumCorchorus capsularis68.1898.6294.861069forward
CNT3018165Triticum turgidumZea mays57.9782.1997.69909forward

Expression of CNT30383400

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MKQSTQNWYGQGESDYLIKIKHCDGPRGC*

>peptide 2 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWRNQRGKKTLLSLTLDRLCEMT*

>peptide 3 (31 aa)
IVPLARGCSPWRPDAVMSTTGRERYSFRGMT*

>peptide 4 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGGISGERRPC*

>peptide 5 (41 aa)
MSPPFGSKARSYRADLGGRHCQVGSLAGAAHLLKDNAGVLR*

>peptide 6 (54 aa)
MRRLRPPPAPTHVRGACDPKGPCHWLSRSSRHAAAGRLEAPFPTGGGLNPLQTT*

Sequence

>CNT30383400
CATTGTTCCATTGGCCAGAGGCTGTTCACCTTGGAGACCTGATGCGGTTATGAGTACGACCGGGCGTGAACGGTACTCATTTCGTGGAATGACCTAGGCA
AGGGAAGTCGGCAAAACGGATCCGTAACTTCGGGAAAAGGATTGGCTCTGAGGACTGGGCTCGGGGGTCGCGGATTGCTCGAGCTGCTCACGCGGCGAGA
GCGGGTCGCCGCGTGCCGGCCGGGGGACGGACCGGGAATCGCCCCTTCGGGGGCTTTCCTCGAGCATGAAACAATCGACTCAGAACTGGTACGGACAAGG
GGAATCCGACTATTTAATTAAAATAAAGCATTGCGATGGTCCTCGCGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAA
ATTCAACCAAGCGCGGGTAAACGACGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCGCATGAATGGATTAACG
AGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGTTGAGCTTGACTCT
AGACCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCACGGGCGCATGTGAAATACCACTACTTTTAACGTTATTTTACTTATTCC
GTGGGTCGGAAGCGGGGCATGTCCCCTCCTTTTGGCTCCAAGGCCCGGTCTTACCGAGCCGATCTGGGCGGAAGACATTGTCAGGTGGGGAGTTTGGCTG
GGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAACAGAAATCTCGTGTGGAACAAAAGGGTAAAAGCTCGTTTGATTC
TGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGATCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAGTTACCACAGGGAT
AACTGGCTTGTGGCAGCCAAGCGTTCATAGCGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGTGTTGG
ATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCATCGTGAGATAGGTTAGTTTTACCCTACTGATGACAGTGTCGCGATAGTAATTCAACC
TAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCCAGTGGCGCGAAGCTACCGTGTGCCGGATTATGACTGAACGCCT
CTAAGTCAGAATCCAAGCTAGCATGCGACGCCTGCGCCCGCCGCCCGCCCCGACCCACGTTAGGGGCGCTTGCGACCCCAAGGGCCCGTGCCATTGGCTA
AGCCGGTCCAGCCGACATGCCGCGGCCGGCCGCCTCGAAGCTCCCTTCCCAACGGGCGGTGGGCTGAATCCTTTGCAGACGACTTAAATACGCGACGGGG
CATTGTAAGTGGCAGAGTGGCCTTGCTGCCACGATCCACTGAGATCCAGCCCCATGTCGCACGGATTC