Detailed information on CNT3038340


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30638258Cucumis meloCapsicum annuum70.139.0280.29279forward
CNT30295853Cucumis meloTriticum aestivum34.4220.3981.02137forward
CNT30663894Cucumis meloTriticum dicoccoides29.95.0681.51119forward
CNT302263Cucumis meloZea mays29.910.6584.87119forward

Expression of CNT3038340

Peptides detected in this lncRNA

>peptide 1 (69 aa)
SKTVPLSIGIGEDPGLKQFVVRVVDSRNYNGRAKGQLLILRKKVVNVLIQNHATNWLQGQDIFRPGSIV*

>peptide 2 (41 aa)
MAVITSSNTNSFFLQQGLDSTGRPPVKFHIVCFPCFVNQSIG

>peptide 3 (38 aa)
MAGQKASCSFSAKKLSMFLFKTMRPTGCKGKISSGQGQ*

Sequence

>CNT3038340
TCCAAGACGGTGCCTCTGAGTATCGGAATAGGAGAAGATCCTGGTCTGAAGCAATTTGTCGTCCGAGTAGTAGATTCCAGGAACTATAATGGCAGGGCAA
AAGGCCAGTTGCTCATTCTCCGCAAAAAAGTTGTCAATGTTCTTATTCAAAACCATGCGACCAACTGGCTGCAAGGGCAAGATATCTTCAGGCCAGGGTC
AATAGTCTGAATGAAGAGCTTCCACTCAGGGTAGTTGCCAGCCATAATTGAATCATACAGGTCCTGAGTGGCATGGCTGTGATTACTTCCTCCAACACGA
ATAGCTTCTTCCTCCAGCAAGGACTTGACTCCACAGGTAGGCCTCCAGTGAAATTTCACATAGTGTGCTTTCCCTGCTTTGTTAATCAGAGTATAGGT