« Back to Triticum turgidum search


Detailed information on CNT30383312


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30283261Triticum turgidumTriticum aestivum99.7797.131001285forward
CNT30719766Triticum turgidumTriticum spelta93.0198.121001198forward

Expression of CNT30383312

Peptides detected in this lncRNA

>peptide 1 (44 aa)
RRTAAATPSSTATHSTVREDSDREIHRSGPSPAARQELYSAVRL*

>peptide 2 (63 aa)
MESGRDCGNRSRRCTDEQPTMTTTNSRLSNKESIARAIIVRMCLVQPKVTGLVMESGSGGITA*

>peptide 3 (52 aa)
MGSVAASSARLRRAAPRPAVDLAGSKTGPSRLVSLASGTPKASPRLWLTRSL*

>peptide 4 (58 aa)
MRTRCKLNKQRRKNIPTDDEVAGAPSMLKNTVDVDPQRGQFPINLDLFSFDPGATTME*

>peptide 5 (39 aa)
MRAGNPAGEPDPQKLHQHPWSPEGIAATDQDDARTNNQP*

>peptide 6 (38 aa)
AYRCCHSLFHSHSFHCEGGFRPRNPPFRSVAGGKTGAV*

>peptide 7 (38 aa)
MHVKVSSYRANKICCVIRLQKNKKISQNRSQEQANMILT

>peptide 8 (29 aa)
MLIHREDNFLSILIYSPLIRGQQQWNRLV*

Sequence

>CNT30383312
CGGCGTACCGCTGCTGCCACTCCCTCTTCCACAGCCACTCATTCCACTGTGAGGGAGGATTCCGACCGAGAAATCCACCGTTCAGGTCCGTCGCCGGCGG
CAAGACAGGAGCTGTATAGCGCCGTCCGTCTCTGATGCGCTTCGCCGCCCGGAGCTGTCACGGCTAGCGCCACCCGTCTCCGGCGCGATTCGCCGCCAGG
AGCCACGGGGTTCGAAGGCAGTAAGACAGGAATCGCCGTCGCTCACCTCCGGCATGCTGCGCGGCCTGGAGCCGTTGTCTTGGCTGGAGGCAAGATGGGA
TCCGTCGCGGCTAGCTCTGCTCGCCTAAGGCGCGCTGCGCCACGCCCGGCCGTGGACTTGGCCGGCAGCAAAACGGGGCCGTCGCGGCTAGTGTCGCTCG
CCTCCGGCACACCCAAGGCCAGCCCAAGGTTGTGGCTGACCCGCTCCCTGTGAGGTGGTGGCACGGTGGAACTGCAGCGCGTGCAGCCGGTGGCTGAGAT
TCCGCGGGAGGTCGCGCCGTCACAGTGGAAGATGCGAACTCGATGCAAACTCAACAAGCAAAGGCGCAAGAACATACCTACGGACGATGAAGTGGCAGGA
GCTCCGTCCATGCTGAAGAACACCGTAGATGTTGATCCACAGAGAGGACAATTTCCTATCAATCTTGATCTATTCTCCTTTGATCCGGGGGCAACAACAA
TGGAATAGATTGGTATGAGAAAGGATGGATGAAGTCACGAAGAGATTTTGGCGGCAATCTGGTGTTAGGCGGGAGATAAACCTGTCGTTTTGCTGATTTT
TTAGAGCTAACTGCAATTAGAGAGATACGCTGGGTTGTTTAAGTGGTGGGGTCCTACCAGGACAGGTGTCGGCCACCCGTTGGCCCTGCACCATAATGCG
TGCTGGGAACCCTGCAGGAGAGCCCGACCCACAAAAATTACACCAACATCCATGGAGTCCGGAAGGGATTGCGGCAACAGATCAAGACGATGCACGGACG
AACAACCAACCATGACCACTACAAATAGCCGTCTGTCCAACAAGGAGAGCATAGCTCGGGCGATTATTGTTAGGATGTGTTTGGTACAACCAAAGGTAAC
GGGACTGGTAATGGAATCAGGTAGCGGTGGGATCACAGCGTAATAGGAGGATTTGCTTTTCTGTTTGTTTCATGCATGTAAAGGTATCAAGTTACAGAGC
TAACAAGATCTGCTGTGTAATCAGATTGCAAAAAAACAAAAAAATCTCACAGAATCGAAGCCAAGAACAAGCTAACATGATCTTGACG