« Back to Triticum turgidum search


Detailed information on CNT30383152


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690730Triticum turgidumOryza sativa13.624.3689.4185forward
CNT30672671Triticum turgidumSetaria viridis14.0821.7392.0588forward
CNT30520803Triticum turgidumSetaria italica15.0421.2294.6894forward
CNT30286278Triticum turgidumTriticum aestivum39.8485.2795.18249forward
CNT30220615Triticum turgidumHordeum vulgare15.3629.6387.596forward
CNT30552437Triticum turgidumOryza glaberrima13.620.1489.4185forward
CNT3015104Triticum turgidumZea mays14.427.2791.1190forward
CNT30678966Triticum turgidumTriticum urartu83.36101.5695.78521forward
CNT30595633Triticum turgidumOryza meridionalis13.626.1589.4185forward
CNT30574749Triticum turgidumOryza barthii13.622.4989.4185forward
CNT30115808Triticum turgidumOryza nivara13.620.1489.4185forward

Expression of CNT30383152

Peptides detected in this lncRNA

>peptide 1 (33 aa)
IDQDRWIRGANWFSICCLFAHSFASSFLNLGSE*

>peptide 2 (65 aa)
SIRIAGSEELTGFPFAVYLHILLPAVSLTWVVSSLVLSICVPIQTQLENRSTETRSFKVEAPYIH*

>peptide 3 (88 aa)
MTVLFYLARARAHAAASATDTLGGGDDDCLLLLILVLASPAGLLGAGSVAAAAGAAARGAALAAGAAPAVAAAARHPPWLWVVAREGS*

>peptide 4 (78 aa)
MRRLVLLIRWVVVMMIACFSSSSCSPRRPASWAPAQLQLQQEQPHAVPHLQPAPHPQLPPQQDILLGCGWWRGKEAKD*

Sequence

>CNT30383152
ATCGATCAGGATCGCTGGATCAGAGGAGCTAACTGGTTTTCCATTTGCTGTTTATTTGCACATTCTTTTGCCAGCAGTTTCCTTAACTTGGGTAGTGAGT
AGTTTAGTTCTTAGCATATGCGTTCCGATTCAGACACAGTTGGAGAACAGATCAACAGAGACAAGATCGTTCAAAGTTGAGGCGCCATATATTCATTAGA
AGTGGAGGCATGAGGAGGGACACTGGTCGAACACTACACGCGAGGCGTACAGAACTAAGGAACACATGACGGTTTTATTTTATTTAGCGCGCGCGCGAGC
GCATGCGGCGGCTAGTGCTACTGATACGCTGGGTGGTGGTGATGATGATTGCTTGCTTCTCCTCATCCTCGTGCTCGCCTCGCCGGCCGGCCTCCTGGGC
GCCGGCTCAGTTGCAGCTGCAGCAGGAGCAGCCGCACGCGGTGCCGCACTTGCAGCCGGCGCCGCACCCGCAGTTGCCGCCGCAGCAAGACATCCTCCTT
GGCTGTGGGTGGTGGCGAGGGAAGGAAGCTAAGGACTGAGAGGATGCTGTGAGGAGTGAGGAGGCTGGTGTGCTTGGTGAGGAGGAAGAAGGCGGGGAGG
GGGGCTATAAATAGGCCGGGCGGGG