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Detailed information on CNT30383013


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONTAET000319, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30639835Triticum turgidumNymphaea colorata95.2575.5591.182528reverse complement
CNT30531232Triticum turgidumEucalyptus grandis94.6174.1492.232511forward
CNT30318007Triticum turgidumCorylus avellana81.3961.892.412160reverse complement
CNT30550233Triticum turgidumIpomoea triloba62.458.7493.61656forward
CNT30619309Triticum turgidumSesamum indicum66.6280.4791.181768reverse complement
CNT30730441Triticum turgidumCorchorus capsularis52.5699.6491.681395forward
CNT30632327Triticum turgidumVigna unguiculata94.7278.3792.162514forward
CNT30508033Triticum turgidumNicotiana attenuata94.875.5690.662516forward
CNT3047210Triticum turgidumPrunus dulcis94.2477.7490.882501forward
CNT30588049Triticum turgidumMusa acuminata62.4777.5592.71658forward
CNT3060563Triticum turgidumArabidopsis lyrata74.3490.0592.751973reverse complement
CNT30445720Triticum turgidumSaccharum spontaneum61.5376.7796.141633reverse complement
CNT30217525Triticum turgidumKalanchoe fedtschenkoi57.1284.589.971516forward
CNT30365083Triticum turgidumSorghum bicolor48.7671.2692.811294forward
CNT3023562Triticum turgidumPopulus trichocarpa75.3689.6193.152000reverse complement
CNT30583181Triticum turgidumEchinochloa crusgalli88.0999.7495.852338forward

Expression of CNT30383013

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MPRHLISDAHEWINEIPTVPVYYPAKPQPRERAWRNQRGKKTLLSLTLVRLCEMT*

>peptide 2 (46 aa)
RAGGQSPGALGAPGGRRRHGRYPRAERRVPRGTALQRPAGSPSDPS*

>peptide 3 (98 aa)
MEQCGQGKSAKRICNFGKRIGSEDRARGSRPRTRRLSVDCSSCSRGESGSPRAGRGTDRESPVRGLSPSMKQSTQNWYGQGESDCLIKTKHCHGPRGC*

>peptide 4 (62 aa)
PRRRPKPGGPRCPRWPSSARPVPARRKACPSGHCAATACGLPIRPVLKHGPRSLTCVRVDGF*

>peptide 5 (30 aa)
MRASRRVLKPGMRKEADEREALTGCTTGRP*

>peptide 6 (41 aa)
MSPPFGSKARSYRADPGGRHCQVGSLAGAAHLLKDNAGVLR*

>peptide 7 (42 aa)
MKIRRTEYRSRPVVLITASGLQGEQPLANGTMWAREVGKTDL*

>peptide 8 (34 aa)
MNGLTRFPLSLSTIQRNHSQGNGLGGISGERRPC*

>peptide 9 (36 aa)
MGKPILRDGVTPADSAITRIPLKGIGLRFPEPGCGG*

Sequence

>CNT30383013
CCGCGCCGGCGGCCAAAGCCCGGGGGCCCTAGGTGCCCCCGGTGGCCGTCGTCGGCACGGCCGGTACCCGCGCGCCGAAAGGCGTGTCCCTCGGGGCACT
GCGCTGCAACGGCCTGCGGGCTCCCCATCCGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTGGGATG
CGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGGGCTGCACCACTGGCCGACCCTGATTTTCTGTGAAGGGTTTGAGTTGGAGCACGCCTGTCGGGACCC
GAAAGATGGTGAACTATGCCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCTCGAAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGCATA
TTGGGGCGAAAGACTAATCGAACCATCTAGTAGCTGGTTCCCTCCGAAGTTTCCCTCAGGATTGCTGGAGCCCATTACGAGTTCTATCAGGTAAAGCCAA
TGATTAGAGGCATCGGGGACGCAACGTCCTCGACCTATTCTCAAACTTTAAATAGGTAGGATGGTGCGGCTGCTTCGGTGAGCCGTGCCACGGAATCGGG
TGCTCCAAGTGGGCCATTTTTGGTAAGCAGAACTGGCGATGCGGGATGAACTGAAAGCCGGGTTACGGTGCCCAACTGCGCGCTAACCTAGAACCCACAA
AGGGTGTTGGTCGATTAAGACAGCAGGACGGTGGTCATGGAAGTCGAAATCCGCTAACGAGTGTGTAACAACTCACCTACCGAATCAACTAGCCCCGAAA
ATGGATGGCGCTGAAGCGCGCGACCCACACCCGGCCATCTGGGCGAGCGCCATGCCCCGATGAGTAGGAGGGCGCGGCGGCCGCTGCAAAACCCGGGGCG
CGAGCCCGGGCGGAGCGACCGTCGGTGCAGATCTTGGTGGTAGTAGCAAATATTCAAATGAGAACTTTGAAGGCCGAAGAGGAGAAAGGTTCCATGTGAA
CGGCACTTGCACATGGGTAAGCCGATCCTAAGGGACGGGGTAACTCCGGCAGATAGCGCGATCACGCGCATCCCCCTAAAGGGAATCGGGTTAAGATTTC
CCGAGCCGGGATGTGGCGGTTGACGGCGACGTTAGGAAGTCCGGAGACGCCGGCGGGGGCCTCGGGAAGAGTTATCTTTTCTGCTTAACGGCCTGCCAAC
CCTGGAAACGGTTCAGCTGGAGGTAGGTTCCAGTGGCCGGAGGAGCACCGCACGTCGCGCGGTGTCCGGTGCGCCCCCGGCGGCCCATGAAAATCCGGAG
GACCGAGTACCGTTCACGCCCGGTCGTACTCATAACCGCATCAGGTCTCCAAGGTGAACAGCCTCTAGCCAATGGAACAATGTGGGCAAGGGAAGTCGGC
AAAACGGATCTGTAACTTCGGGAAAAGGATTGGCTCTGAGGACCGGGCTCGGGGGTCCCGGCCCCGAACCCGTCGGCTGTCGGTGGATTGCTCGAGCTGC
TCACGCGGCGAGAGCGGGTCGCCGCGTGCCGGCCGGGGGACGGACCGGGAATCGCCCGTTCGGGGGCTTTCCCCGAGCATGAAACAGTCGACTCAGAACT
GGTACGGACAAGGGGAATCCGACTGTTTAATTAAAACAAAGCATTGCCATGGTCCTCGCGGATGCTGACGCAATGTGATTTCTGCCCAGTGCTTTGAATG
TCAAAGTGAAGAAATTGAACCAAGCGCGGGTAAACGGCGGGAGTAACTATGACTCTCTTAAGGTAGCCAAATGCCTCGTCATCTAATTAGTGACGCACAT
GAATGGATTAACGAGATTCCCACTGTCCCTGTCTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGCGGGGAAAGAAGACCCTGT
TGAGCTTGACTCTAGTCCGACTTTGTGAAATGACTTGAGAGGTGTAGGATAAGTGGGAGCCCTCACGGGCGCAAGTGAAATACCACTACTTTTAACGTTA
TTTTACTTATTCCGTGGGTCGGAAGCGGGGCATGTCCCCTCCTTTTGGCTCCAAGGCCCGGTCTTACCGGGCCGATCCGGGCGGAAGACATTGTCAGGTG
GGGAGTTTGGCTGGGGCGGCACATCTGTTAAAAGATAACGCAGGTGTCCTAAGATGAGCTCAACGAGAAAATAAATCTCGTGTGGAACACAAGGGTAAAA
GCTCGTTTGATTCTGATTTCCAGTACGAATACGAACCGTGAAAGCGTGGCCTATCGATCCTTTAGATCTTCGGAGTTTGAAGCTAGAGGTGTCAGAAAAG
TTACCACAAGGATAACTGGCTTGTGGCAGCCAAGCGTTCATAGTGACGTTGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCATTGTGAAGCAGAATT
CACCAAGTGTTGGATTGTTCACCCACCAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAAGTTAGTTTTACCCTACTGATGACAGTGTCGCGA
TAGTAATTCAACCTAGTACGAGAGGAACCGTTGATTCACACAATTGGTCATCGCGCTTGGTTGAAAAGCTAGTGGCGCGAAGCTACCGTGTGCTGGATTA
TGACTGAACGCCTCTAAGTCAGAATCCAAGCAAGCATGCGACGCCTGCGCCCGC