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Detailed information on CNT3038287


BLAST search results

BLAST vs Swiss-Prot:
sp|Q3BAI2|YCX91_PHAAO, E-value = 5e-13

BLAST vs NONCODE:
NONORUT000586, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670689Cucumis meloSetaria viridis61.7786.4698.6926forward
CNT3089926Cucumis meloSolanum tuberosum22.4815.2497.63337forward
CNT30554477Cucumis meloOryza glaberrima48.2310097.79723forward
CNT30605073Cucumis meloGossypium raimondii69.5168.5597.61042forward
CNT30357719Cucumis meloLactuca sativa53.9743.3897.65809forward
CNT30571801Cucumis meloVitis vinifera79.3991.1998.571190forward
CNT3099709Cucumis meloOryza rufipogon24.7517.0499.19371reverse complement

Expression of CNT3038287

Peptides detected in this lncRNA

>peptide 1 (70 aa)
MCRFPKKKIGEHPFSRSYGVILPSSFDMVLSSALVYSTCSPVSVWGTVSSPGGSPSQKEVFSWKFQPCSL*

>peptide 2 (53 aa)
MRKACRLVRLNETFENESAHSQVLRKVSAGARSRSPPRPLGRVKAHFRVKAFR*

>peptide 3 (39 aa)
MADFRLCSTSRSHSQAGLYHYAHEQNLSLSLPSHTSVTL*

>peptide 4 (38 aa)
EHLAVLTPLAYRSDVQKPRPRTCIEKDFPRRSGSSIPT*

Sequence

>CNT3038287
CTGAACACCTCGCGGTGCTTACACCTCTCGCCTATCGAAGTGATGTTCAAAAACCTCGTCCGAGAACTTGTATAGAGAAGGATTTCCCGCGGCGCAGCGG
TTCTTCCATACCAACTTAGCTGCCCGGCGCTGCTATTGGCATAACAACCGGTACACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGTTGGCTCC
TCGCAGTTCTCCCTTTCACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGTACCACTTTCATCGGCGAACAACCGAA
CCCTTGGGACCTTCTTCAACCCCAGGATGTGATGAGTCGACATCGAGGTGCCAAACGACTCCGTCAATAAGAGCTCTTGGGAGTCATCAGCCTGTTATCC
CCGGCGTACCTTTGATCCGTTGAGCGAGAGCCCTTCCACACGGAACTCCCGGATCACTATGGCCGACTTTCGTCTCTGTTCGACCAGTCGGTCTCACAGT
CAGGCAGGCTTATACCATTACGCTCACGAGCAGAATCTGAGCTTGAGCCTACCTTCGCACACCTCCGTTACTCTTTAGGAGGCATCCTTAGACGAAAGAG
TGGTCTTTCAGGATTGGTCGTTGTGTGTCACCACCTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTGAAGGTGCACGGGGT
CTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCAGTCGTGACACCATTCGTGCAG
GTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTTATCACACTTCTCCT
TCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATG
TGCCGCTTTCCTAAGAAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAG
TATACTCTACTTGTTCACCTGTGTCGGTTTGGGGTACGGTCAGTTCACCGGGAGGATCGCCCTCCCAAAAAGAAGTTTTTTCCTGGAAGTTTCAACCTTG
TTCACTATGACAAGAGTCGCGACTATAAACAGACTCACGACTATGGCGGTACGCTCTCTCGGGACCCCTACTCAAAGGCGAGCACTGGAATGAGAAAGGC
TTGTAGACTCGTGAGGCTGAACGAGACATTCGAAAACGAAAGCGCACACTCTCAAGTGCTGAGAAAGGTGTCAGCAGGTGCGCGGAGCCGGAGCCCGCCT
CGCCCGCTGGGCCGAGTCAAAGCCCACTTCAGAGTCAAAGCCTTTAGATAACAAAAAAAGGTGTCCGCCCCCCACGTAGCGGTCGCCAAACGGAGACGA