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Detailed information on CNT30382315


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730522Manihot esculentaCorchorus capsularis9.9130.1689209forward
CNT30223767Manihot esculentaHordeum vulgare9.8655.3287.02208forward
CNT30511784Manihot esculentaSolanum lycopersicum10.3333.1891.28218forward
CNT30369168Manihot esculentaOryza glumipatula8.9151.5187.23188forward

Expression of CNT30382315

Peptides detected in this lncRNA

>peptide 1 (61 aa)
YYPMIVRFKIKIPSPILGSKNEFDNHVGQANIQLTITMRSPYYLPNKNCLKKDVIKKISEM*

>peptide 2 (51 aa)
MLKARECTLVEPRVSGGSSMGTTAGHNLSINSWRKMQKGQNVWETTQQRSV*

>peptide 3 (51 aa)
MYLLKALPSEPHPSLLFQKPWFTVRNRLNFPCKESPNIQSTHHFSNLKSST*

>peptide 4 (38 aa)
MGSLSTKILTSGSGKRIIIESSSGSEQGKICSRPESVL*

>peptide 5 (37 aa)
MENLLTYIAGAKGISKEGKITAQTPSSRDVLAEGSTF*

>peptide 6 (31 aa)
MTGFGPFLEQSFDGIPIYQNFDFRFRQTNNN*

>peptide 7 (29 aa)
MEILSEKSPPNHCYGYRNREHQHVGSRSK*

Sequence

>CNT30382315
GTATTATCCTATGATTGTACGGTTCAAGATTAAAATCCCTTCACCAATTCTAGGCTCAAAAAATGAGTTTGACAACCATGTAGGTCAGGCTAATATTCAG
TTAACAATCACAATGAGAAGTCCTTATTACTTACCAAACAAGAATTGCCTGAAAAAAGATGTTATAAAAAAAATATCAGAGATGTAACTAGAATCTTCAC
CATCATATTATAAAGCACACAACCTTATGACTAAAAATCTTCAATTTGAGCAACCAATGGTAAAAAGGAAATCAACCAATAATTCAAGGAAATATCAGTT
ATGCAAAAAATGAATTGAAAATGGTCACATTTAGCATTCAAGTCCTACTATTGTCTATTCAGGTCATTCTTAGAAAACTAGCCTGATTTTCTCTCTTTGG
CAGCTATAGCATAAAACACAAGAACATTTATTTACAAATTGCCATTTCTGAGGAAACGCTTCTTGATAGGAAATGGAGATACTTTCTGAGAAATCTCCTC
CAAATCATTGCTATGGCTATCGAAATCGTGAGCATCAGCATGTAGGTTCCAGATCCAAGTAGTAGTATCAGGTCCTTTAGCTATTGTTCTTGAGAAATGA
CCGGGTTTGGCCCATTCCTCGAACAAAGTTTTGATGGGATCCCTATCTACCAAAATTTTGACTTCCGGTTCCGGCAAACGAATAATAATTGAGTCCAGCT
CTGGTAGCGAGCAGGGGAAAATATGCTCAAGGCCAGAGAGTGTACTCTAGTAGAACCACGAGTCTCTGGAGGAAGCTCAATGGGGACGACAGCTGGCCAT
AATTTGTCAATAAACTCCTGGAGAAAAATGCAGAAAGGCCAAAACGTGTGGGAGACAACTCAGCAAAGGAGTGTTTGAGGCATAAAAGAATTAACTGTAA
TTTTCCAGCTTTTGAGCGTGGGACAAGTTGTATTCGTTTTTCGGGAGGTTATTCTCCTGTTTTGGCATTTAGTTTTCTTGTTGCTTTCTTTCTTCCCTAA
ATAAAGCTATTGTAATTTTTTACTGGTTTTCCCAATAAATCTTTGCAGACTGGCTGTTTGGGATTCGTCAAGTGGTCTGACCTGCCAACTGCATGCCTAT
CACTAGAATGGAAAATACAATGGATATGGTAGAGACTAGATAGGAATCTCACTCTTTGGAAGATAATGTTTTCATTTGAAACTTTCAACTATGGAGAATT
TGCTCACATACATTGCCGGTGCCAAGGGTATTTCTAAGGAAGGCAAGATCACCGCTCAAACTCCTTCCAGTAGAGATGTACTTGCTGAAGGCTCTACCTT
CTGAGCCCCACCCATCACTCTTGTTCCAAAAGCCTTGGTTTACAGTGAGAAACAGATTGAACTTCCCATGCAAGGAATCCCCAAACATTCAATCCACCCA
TCACTTCTCTAACTTAAAAAGTAGCACTTGAAATGCCAAGCACTTAACTAGCTACTCATCTCAAACCAATAACACACTACACAGTAAAACTCAAACAACA
ATCAACCATATAATATAAATGAAAAAACATAGAACAAAGTTCTTTCTGCAACTATGTCAAAGGCGTTACTTCTTAATGTTGACTACTTAAATAAGTAAAG
CCCTAATATCTCTAGAAGGATCTGACCAATTGAGATCATAATCCCGTTCAAATAGACCCTGAAATAAAATCCTTAATATCCAATGGAATTGCCCTTTGAA
AATTGAATCCCAAAGGAATAAATTTGTTAAATGAAAATGCAGATGAATTCTTGTCACTCCAAAATAGTTATTTGCTAAATTGGAGTCAAACAACTCGGTA
AGACGAACACATAATAGCCAAATATTGCAAAAAAATGAAATGCATCAGCAAAAAATCAGACACATGGTAATCAAAGAGGGATAACTCTCGACACAGTCGG
AGTTATGAGTTTCCATATTACATTAGCACCTGTCTCCATCACCCAATCACTTGCAATTTATCATGAGAAGCCTTGAATCTTCTTACTCCTTCCATCACCA
TTAAAATTCTAAACCCAGGTTAGCTGCGCTGCTTCAGATTCGGATTCTCCTCTTTCCACGAACATCACAAATGCGCAGTTTAACATTTACCCAGTAACAT
CCTTGTTCCC