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Detailed information on CNT30382201


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30479293Manihot esculentaArabidopsis halleri9.1226.2989.3966forward

Expression of CNT30382201

Peptides detected in this lncRNA

>peptide 1 (50 aa)
FSLISTIRSNFLLNSGFSTSSTAGKILAVVRFVCIEKKILDNYLHRLVQI*

>peptide 2 (44 aa)
LVNFHHTVQLSLEFWVLNIQHCWENSCCRTVCLHRKENFGQLSS*

>peptide 3 (33 aa)
MFSYPKPTNSTYLDLYQVGLLKGIFSSSKNVSY*

Sequence

>CNT30382201
TTCTCGTTAATTTCCACCATACGGTCCAACTTTCTCTTGAATTCTGGGTTCTCAACATCCAGCACTGCTGGGAAAATTCTTGCTGTCGTACGGTTTGTCT
GCATAGAAAAGAAAATTTTGGACAACTATCTTCATAGACTTGTGCAAATATAGTGATTTGGTCACAATTGAACATCCTATTGGACCCGTTGTAAAAGCAG
AACCATCATACCACCACTTTTATATTTTTATTTTTACTACTGGCTAAGGGGAGGGGGGAGTTGAAGCCGGAACTCTCAGGTTCCACAATATGCGACTATC
ACCAAGCTAAGTCTACGGTTGCACTAGTTTCAGTTTTTCTATTAATTCCTTAATATTATTTGGAATGAAAGAATTTAATTCTCAAAAATTTTCATTTTAA
AGAAACTAAAATCATCCATGATTTTGTAAAAGTTTACGGCTGCACAACTTTGATTCTTTTATGTTCTCTTATCCAAAACCTACTAATTCAACTTATTTGG
ATTTGTACCAGGTAGGTTTATTAAAGGGCATCTTCTCAAGTTCTAAAAATGTTTCATACTAGCACTTAAATTCGAAATTCATAATATTCAATAAAATTGA
TTTATTTTCTATCAATTCCCTGGTCTGAAAGGAACAAAATTTCCAATCTCAAGATATTATCTAGTCAAGGAGCAAGCAGAAAAGTATGAGTTGGATGTTA
CAGAGCTGAAATCAGTCTCACCTC