Detailed information on CNT30382149


BLAST search results

BLAST vs Swiss-Prot:
sp|P25818|TIP11_ARATH, E-value = 3e-46

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30514098Manihot esculentaJuglans regia89.1264.1480.71254forward
CNT30374560Manihot esculentaArabidopsis thaliana31.5816.8987.7890forward
CNT3075983Manihot esculentaBrassica juncea25.2610.2787.572forward
CNT3022241Manihot esculentaPopulus trichocarpa24.917.387.3271forward
CNT30726138Manihot esculentaLupinus angustifolius25.9615.0486.4974forward

Expression of CNT30382149

Peptides detected in this lncRNA

>peptide 1 (93 aa)
QLQKKEQKLRRVMFPPTKAPKVTAGLTWPPEMLAPTETATNRAKAWARDAATRPAGVFAALSVSLLKAIPEPSPAKTKIRVEMNSAKAAFKASG

>peptide 2 (41 aa)
PTPEERAKAEESDVPTNKSTESNSRVDMATGDVGANRDSNK*

Sequence

>CNT30382149
ACCAACTCCAGAAGAAAGAGCAAAAGCTGAGGAGAGTGATGTTCCCACCAACAAAAGCACCGAAAGTAACAGCAGGGTTGACATGGCCACCGGAGATGTT
GGCGCCAACCGAGACAGCAACAAATAGAGCAAAAGCGTGGGCGAGGGATGCAGCAACAAGACCGGCAGGGGTGTTTGCAGCGTTGTCGGTTAGCTTGCTA
AAGGCCATACCAGAACCTTCTCCGGCGAAAACGAAAATAAGAGTGGAGATGAACTCAGCCAAAGCCGCCTTCAAGGCGTCTGGAT