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Detailed information on CNT30382100


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9SFF9|GL17_ARATH, E-value = 4e-71

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515314Manihot esculentaJuglans regia51.7839.7679.01262forward
CNT3071407Manihot esculentaQuercus suber32.0268.9482.72162forward
CNT30711805Manihot esculentaGlycine max12.6526.1285.9464forward
CNT3090146Manihot esculentaSolanum tuberosum25.8917.0881.68131forward
CNT30567662Manihot esculentaActinidia chinensis16.427.4885.5483forward
CNT30573105Manihot esculentaVitis vinifera55.9346.7879.51283forward
CNT30706383Manihot esculentaPrunus avium22.5318.1583.33114forward
CNT3031606Manihot esculentaTheobroma cacao41.345.9383.25209forward

Expression of CNT30382100

Peptides detected in this lncRNA

>peptide 1 (54 aa)
MTPGFWLLRPANATAFVFAMLNWKWMRPIGNTKTSPGYKTLVNKRLGLDVTKPT*

Sequence

>CNT30382100
CTCAATTATTGGCCACACTGAAGGAAACATAATTAAAAGCCATTATTAAACAGTAGGCAAACATTGACTAATCCTGATAGACCTTTCATGCATTATTCTT
AAACAGTTTCTGAAGATTTTCCACGACATTCTTATCCAGCTGGAAAGCTTTAGCGAGAACATCAGGATTAATAGGTGGATTAGGCCCAAAGACTGCATTT
GCTATAGTGATGACGCCTGGGTTTTGGCTGCTTAGACCTGCAAACGCAACTGCATTCGTCTTTGCAATGTTAAACTGGAAGTGGATGAGACCAATTGGAA
ATACAAAAACATCTCCGGGGTATAAGACTTTGGTGAACAAACGATTGGGGTTGGATGTGACAAAGCCAACATAAAGGGTGCCCTCCACAACTACAAGGAT
CTCTGTGGCACGAGGGTGAGTGTGGGGAGGGTTTAAGCCACCATTAGGAGCAAAGTCTAAGCGAGCGAGAGAAATACCAAGAGTATTAAGTCCTGGTATT
TTGTCA