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Detailed information on CNT30381388


BLAST search results

BLAST vs Swiss-Prot:
sp|P49318|CATA2_RICCO, E-value = 7e-118

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516671Manihot esculentaJuglans regia37.3946.5882.11218forward
CNT30282683Manihot esculentaChenopodium quinoa38.0824.180.63222forward
CNT3021611Manihot esculentaCitrullus lanatus37.9155.6779.19221forward
CNT30405510Manihot esculentaBeta vulgaris21.6126.8187.3126forward
CNT30526368Manihot esculentaPhaseolus vulgaris21.787.9888.19127forward
CNT30708944Manihot esculentaGlycine max25.7326.3686150forward
CNT3046375Manihot esculentaPrunus dulcis37.3931.2384.86218forward
CNT30168584Manihot esculentaPistacia vera11.6625.0988.2468forward
CNT30638211Manihot esculentaCapsicum annuum33.7935.379.19197forward
CNT3098188Manihot esculentaSolanum tuberosum25.5630.0481.21149forward
CNT3085325Manihot esculentaVigna radiata21.7817.9687.4127forward
CNT30542306Manihot esculentaBrassica napus17.3221.9683.17101forward
CNT3080335Manihot esculentaBrassica juncea29.3330.1681.87171forward
CNT30654455Manihot esculentaRosa chinensis25.5632.685.91149forward
CNT30478285Manihot esculentaArabidopsis halleri20.4134.3985.71119forward
CNT30154060Manihot esculentaPrunus persica37.3921.7184.86218forward
CNT30704835Manihot esculentaPrunus avium37.3972.9182.57218forward
CNT3022395Manihot esculentaPopulus trichocarpa47.1766.9178.91275forward
CNT3050211Manihot esculentaCucumis sativus37.3957.9878.44218forward

Expression of CNT30381388

Peptides detected in this lncRNA

>peptide 1 (33 aa)
PPLDFRNLASLGSETVPLSISISKCPKLEQLVI*

>peptide 2 (40 aa)
MFLFNTRRPSCCRGNISSGQILVISSGSKSNLSSSAGSIV*

>peptide 3 (59 aa)
MTRIERKHLILSKPVIDVPVQHQTPKLLQRKHILRPDLSHIKWIKVKFVFISWIHCLNK*

Sequence

>CNT30381388
GCCACCTTTAGACTTTAGAAATTTGGCCTCACTTGGGTCCGAGACGGTGCCTCTGAGTATCAGCATAAGCAAATGTCCTAAGCTGGAACAGCTTGTCATT
TGAATAGTGAATCCCAGGAACCACATGACCAGGATCGAACGCAAGCATCTCATTCTCAGCAAACCAGTTATCGATGTTCCTGTTCAACACCAGACGCCCA
AGTTGCTGCAGAGGAAACATATCCTCAGGCCAGATCTTAGTCATATCAAGTGGATCAAAGTCAAATTTGTCTTCATCAGCTGGATCCATTGTCTGAATAA
ATAGTTTCCACTCAGGATAGTTGCCAGCAGCAATGGAATCATACAGATCTTGCGTAGCATGGCTGTGGTTGACACCTCCAATCTTCTGAATCCCAACATC
ATCAAAGAACCAAGCGAAAGTGCTCAAGCTCTCAGGGTGGTGTGATAAGAAGTCAAAGATCCTCCAGTATTCTTGGATGTGAGACTTGGGATTTGGCTTA
AATGCATGAATCACATCTGGGAATTTGATTCCATCACGGATGAAGAAGACAGGGAAATTGTTTCCCACAATATCGAAGTTACC