Detailed information on CNT30381356


BLAST search results

BLAST vs Swiss-Prot:
sp|A9P822|METK1_POPTR, E-value = 2e-39

BLAST vs NONCODE:
NONPOPT000587, E-value = 3e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30190465Manihot esculentaSecale cereale62.5463.1987.36182forward
CNT30225303Manihot esculentaHordeum vulgare30.5830.6989.8989forward
CNT30508429Manihot esculentaSolanum lycopersicum33.6839.6886.7398forward
CNT3066706Manihot esculentaLeersia perrieri44.6738.2489.23130forward
CNT30367875Manihot esculentaSorghum bicolor65.9823.2291.67192forward
CNT30557997Manihot esculentaPanicum hallii26.4615.6287.0177forward

Expression of CNT30381356

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MFLEVSGNLIICDSLIVLGGDEDSVYTDWDHCTIVIV

>peptide 2 (62 aa)
MTKRPDGLRWKMVFSSRYFSGMTALMTCSLRSAAISSFVTVSSCWVEMRTVCTRTGTIAPLSL

>peptide 3 (33 aa)
ASKTICYNTLGCLPNNISTAPVHLVLHHREDHQ*

Sequence

>CNT30381356
CGGCGAGCAAGACCATTTGCTACAATACTCTTGGCTGCCTGCCTAACAATATAAGCACCGCTCCTGTCCACCTTGTCCTGCATCACCGTGAGGACCACCA
ATGACAAAACGACCAGATGGGTTAAGGTGGAAGATGGTCTTCTCATCAAGGTACTTCTCAGGGATGACAGCTTTGATGACATGTTCCTTGAGGTCAGCGG
CAATCTCATCATTTGTGACAGTCTCATCGTGCTGGGTGGAGATGAGGACAGTGTGTACACGGACTGGGACCATTGCACCATTGTCATTGTA