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Detailed information on CNT30381329


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST001145, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30273043Manihot esculentaChenopodium quinoa24.88.6987.56217forward

Expression of CNT30381329

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MAKIPRPGDGRGGSGVAPDNGGGRLPEGLALHKLRLVKNW*

>peptide 2 (55 aa)
MAEGAVGWHRIMEAEGCRRDWPFTNSDLSRTGEDLRSDAEAIFFFFLPFLALLCC*

>peptide 3 (31 aa)
MRRTHAMGLDLGTMFCSTRTSTIFLPSVVDW*

>peptide 4 (39 aa)
VHHIKYTLTNLISKWLIKWWLKVHVITKNKNSLQGYKAF*

>peptide 5 (34 aa)
MPWVWTLGQCFAQQEHQPSSCHQWWIGRESLQRE*

Sequence

>CNT30381329
GGTGCATCATATCAAGTACACACTAACTAATCTCATCAGCAAATGGCTTATTAAGTGGTGGCTAAAAGTACATGTTATAACAAAGAACAAAAATAGTCTG
CAAGGCTATAAAGCATTTTAACACACAGTGAGAAATTAATCTTGCATTTGATTTCTCCTTCAACCTTCATTCTGTAGCTTAGTACACGTAGCCCTTGACG
AACATTCCTTTCTTGGCTTCCTCTGATTCTCCTTCGCCGGTGTACTTGCCAAGCTGAGCAAGTGAGTTGGCCTTGGCACGGATAAGAAGTGCCTCCTGAG
CAGCCTGGACATTCTCAGGTCTGCCAGCCCAGGTCTTGAGGCAAGTGTTCTGGAGAGCTCTTGCATATGAGAAGGACACATGCCATGGGTTTGGACCTTG
GGACAATGTTTTGCTCAACAAGAACATCAACCATCTTCTTGCCATCAGTGGTGGATTGGTAGAGAGTCTCTTCAAAGAGAATAGAACCAGAAATGTATTG
GCCGAGGCCAGGAGCTGTCACCAGAAGGGTTCGGTAGGCCTGGCGGTTAGCCTCTGTGTTCTCCAATCCAATTGATGCAAGACGTTTCCCGCAGGTAGCA
TTGGACTCATCCATGGCCAAAATACCACGTCCAGGTGATGGCAGAGGGGGCAGTGGGGTGGCACCGGATAATGGAGGCGGAAGGCTGCCGGAGGGACTGG
CCCTTCACAAACTCAGACTTGTCAAGAACTGGTGAGGACTTGAGAAGTGATGCTGAGGCCATTTTTTTTTTCTTTCTTCCTTTCTTGGCTCTGCTCTGCT
GCTAGCTTTTGCTTGAGAAGATAGAGGCCTTAAAAATACTCTACAATCTTATCTGCTATTCTTCTAAGTTAGTGC