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Detailed information on CNT30381313


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONMEST001145, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676856Manihot esculentaSetaria viridis38.3732.8880.56216forward
CNT30640885Manihot esculentaNymphaea colorata40.528.1585.96228forward
CNT30374484Manihot esculentaArabidopsis thaliana22.9130.3587.6129forward
CNT30710572Manihot esculentaGlycine max273490.13152forward
CNT30586189Manihot esculentaMusa acuminata24.3319.1981.75137forward
CNT30319836Manihot esculentaAsparagus officinalis23.4516.5484.09132forward
CNT30604735Manihot esculentaOryza punctata21.1414.1282.35119forward
CNT30725414Manihot esculentaLupinus angustifolius27.1817.1788.89153forward

Expression of CNT30381313

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MAFSSRSNHARLEKNTLKHDIVLSQVEENLSPDLLCYFKCPINAMLTIKQDFW

>peptide 2 (38 aa)
MRRTHAMGLDLGSWRSAPGVTMLGLRRIPSNMTLFSAK*

>peptide 3 (39 aa)
VHHIKYTLTNLISKWLIKWWLKVHVITKNKNSLQGYKAF*

Sequence

>CNT30381313
GGTGCATCATATCAAGTACACACTAACTAATCTCATCAGCAAATGGCTTATTAAGTGGTGGCTAAAAGTACATGTTATAACAAAGAACAAAAATAGTCTG
CAAGGCTATAAAGCATTTTAACACACAGTGAGAAATTAATCTTGCATTTGATTTCTCCTTCAACCTTCATTCTGTAGCTTAGTACACGTAGCCCTTGACG
AACATTCCTTTCTTGGCTTCCTCTGATTCTCCTTCGCCGGTGTACTTGCCAAGCTGAGCAAGTGAGTTGGCCTTGGCACGGATAAGAAGTGCCTCCTGAG
CAGCCTGGACATTCTCAGGTCTGCCAGCCCAGGTCTTGAGGCAAGTGTTCTGGAGAGCTCTTGCATATGAGAAGGACACATGCCATGGGTTTGGACCTTG
GTTCATGGCGTTCAGCTCCAGGAGTAACCATGCTAGGCTTGAGAAGAATACCCTCAAACATGACATTGTTCTCAGCCAAGTAGAAGAAAACCTCAGCCCA
GACCTTCTGTGCTACTTCAAATGTCCTATCAATGCCATGCTCACCATCAAGCAAGATTTCTGG