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Detailed information on CNT30381286


BLAST search results

BLAST vs Swiss-Prot:
sp|P51080|CHS7_MEDSA, E-value = 2e-110

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30524897Manihot esculentaPhaseolus vulgaris16.5120.3684125forward
CNT30195932Manihot esculentaPisum sativum16.642084.13126forward
CNT3045136Manihot esculentaPrunus dulcis16.5120.183.2125forward
CNT30156270Manihot esculentaPistacia vera23.1265.0682.86175forward
CNT3096437Manihot esculentaSolanum tuberosum10.1732.4987.0177forward
CNT30564019Manihot esculentaActinidia chinensis21.6622.1381.1164forward
CNT30597791Manihot esculentaFraxinus excelsior14.1335.7982.24107forward
CNT30355633Manihot esculentaLactuca sativa16.5122.8986.4125forward
CNT30155426Manihot esculentaPrunus persica10.5727.1287.580forward
CNT30571894Manihot esculentaVitis vinifera32.3618.8979.59245forward
CNT30330754Manihot esculentaDioscorea rotundata38.4447.1680.76291forward
CNT30114129Manihot esculentaFicus carica18.121.5781.02137forward

Expression of CNT30381286

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MEFQSLIPIGVNASTKLFSMFFEINPGTSFNK*

>peptide 2 (62 aa)
MGIRRTAESDSGDLRAHNKNTSTLIVFSQVLGQTKDSPTSKAALLIHHKSLDRRTKAKKLGE*

>peptide 3 (39 aa)
MDAQWKYQDQNQQLRLQLHHQKVLDLPTNPNGYQKDRGK*

>peptide 4 (32 aa)
SFFQVLDSVSLQLDRELLGHQDELSRKWSSNR*

Sequence

>CNT30381286
CTCATTTTTTCAGGTTTTAGACTCAGTTTCGCTTCAACTTGATCGAGAATTGCTGGGCCACCAGGATGAGCTATCCAGAAAATGGAGTTCCAATCGTTAA
TACCAATTGGAGTGAATGCTTCTACCAAGCTTTTCTCTATGTTCTTTGAGATTAACCCTGGAACATCCTTTAATAAATGAAAGGTGAGACCCACTTCACG
TAAGTGTCCATCAATGGCTCCATCAGAGTCAGGAAGGATAGTTTGAGCTGCAGAAACAAGCTGAAATAATGGACGCTCAATGGAAGTATCAGGATCAGAA
CCAACAATTAAGGCTCCAGCTCCATCACCAAAAAGTGCTTGACCTACCAACGAATCCAAATGGGTATCAGAAGGACCGCGGAAAGTGACAGCGGTGATCT
CAGAGCACACAACAAGAACACGAGCACCCTTATTGTTTTCAGCCAAGTCCTTGGCCAAACGAAGGACAGTCCCACCAGCAAAGCAGCCCTGCTGATACAT
CATAAATCGCTTGACAGAAGGACGAAGGCCAAGAAGCTTGGTGAGTGATCTTAGACTTTGGTTGGCCCCATTCTTTGATAGCTTTAGTTGCTGCTTCCTT
TCCAAGCTTTGGAACTTCCACCACCACAATGTCTTGGCGAGCATCAAGAGAAGGTTCCCAGTAAGCGCACATGTTCGGATTCTCTTTCAAGATTTCTTCA
TCTAAATGCATGTAACGTTTCTTGATCATAGATTTATCACCTGTTAATATGTTACCA