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Detailed information on CNT30381201


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CH33|UBQ11_ARATH, E-value = 6e-153

BLAST vs NONCODE:
NONMEST001181, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30510145Manihot esculentaSolanum lycopersicum74.5849.4484.09704forward
CNT30153579Manihot esculentaPrunus persica73.5243.8184.29694forward
CNT3026462Manihot esculentaPopulus trichocarpa72.8875.9485.47688forward
CNT30334106Manihot esculentaCynara cardunculus72.4633.3783.04684forward

Expression of CNT30381201

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSELSTSKVIVFPVRVLTNICMPPRRRSTKWRVDSFWIL*

Sequence

>CNT30381201
AATCGTAATTCCAGAATATTATATTGGCAAGTCAAGCCAACTTTATTAACCCTTGAAGTAAAAGTACCAATGACCTTATAGCGGCCATTTCAAAAGCTTT
AGTAAAGTACTCGCAACCATTCCAAAATAACAAGTCTTGGAGGTTTAAAAACTTATTTAAAGCCATTAAGGCAAGGCATTACTAGTAGCTATTAAGAACA
TACTAGACACAACCAAAACTCAGAAACCACCGCGAAGGCGGAGGACAAGGTGCAAGGTAGACTCCTTCTGGATATTGTAATCAGCAAGGGTCCTTCCATC
CTCAAGCTGCTTTCCAGCGAAAATCAATCTCTGCTGATCTGGTGGAATTCCTTCCTTGTCCTGGATTTTAGCCTTCACGTTGTCAATAGTATCCGAACTC
TCTACCTCCAAAGTAATGGTCTTCCCAGTAAGAGTCTTCACAAAAATCTGCATTCCACCACGAAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGA
TGTTGTAGTCTGCAAGAGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCTGGAGGAATCCCTTCTTTGTCCTGAATTTTGGC
CTTGACATTGTCAATGGTGTCCGAACTTTCAACCTCCAAGGTGATTGTCTTCCCTGTAAGGGTCTTAACAAATATCTGCATGCCACCACGAAGGCGGAGC
ACCAAGTGGAGGGTGGACTCTTTCTGGATATTGTAGTCTGCAAGTGTGCGGCCATCCTCAAGCTGCTTACCAGCAAAGATCAACCTCTGCTGGTCAGGTG
GAATTCCCTCTTTGTCCTGGATTTTAGCTTTAACATTGTCAATGGTGTCTGAGCTTTCCACCTCCAGGGTGATTGTCTTTCCGGTTAGGGTTTTCACGAA
GATCTGCATCTGTTAGCCAGAAAGAAATCAAATTAACGTCAGTT