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Detailed information on CNT30381182


BLAST search results

BLAST vs Swiss-Prot:
sp|P25856|G3PA1_ARATH, E-value = 8e-38

BLAST vs NONCODE:
NONMTRT001777, E-value = 4e-37

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30698911Manihot esculentaQuercus lobata14.6121.5694.8358forward
CNT30268339Manihot esculentaChenopodium quinoa39.0419.0487.1155forward
CNT30729008Manihot esculentaCorchorus capsularis62.2246.3483.81247forward
CNT30524716Manihot esculentaPhaseolus vulgaris60.7130.7885.89241forward
CNT30628637Manihot esculentaVigna unguiculata56.1726.0286.55223forward
CNT30712586Manihot esculentaGlycine max60.7135.785.06241forward
CNT30385999Manihot esculentaTriticum turgidum20.1515.0791.2580forward
CNT30509382Manihot esculentaSolanum lycopersicum26.9516.7487.85107forward
CNT30146657Manihot esculentaMedicago truncatula59.1921.4283.4235forward
CNT30658162Manihot esculentaTriticum dicoccoides20.6514.7291.4682forward
CNT30310642Manihot esculentaCamelina sativa61.4637.3781.56244forward
CNT30598889Manihot esculentaFraxinus excelsior16.8828.7686.5767forward
CNT30215929Manihot esculentaHelianthus annuus30.4812.8386.78121forward
CNT30361992Manihot esculentaSorghum bicolor17.6320.0687.1470forward
CNT30622203Manihot esculentaCajanus cajan60.7127.9983.4241forward
CNT30357505Manihot esculentaLactuca sativa21.9113.1893.187forward
CNT30572796Manihot esculentaVitis vinifera57.6843.3786.03229forward
CNT30119544Manihot esculentaCitrus clementina33.2511.4884.85132forward
CNT30330803Manihot esculentaDioscorea rotundata20.9113.4387.9583forward
CNT30558465Manihot esculentaPanicum hallii20.440.590.1281forward
CNT30724991Manihot esculentaLupinus angustifolius58.449.9483.62232forward

Expression of CNT30381182

Peptides detected in this lncRNA

>peptide 1 (30 aa)
QIHNPLRVTPFIIIPSNHLHHIISHNHGQG*

>peptide 2 (48 aa)
MQRLPLLQMSFLIPAPPVEVGTMFRAAARARLRSRWLASSSLWSPVYE*

>peptide 3 (57 aa)
MVRDESTVDDTSEHLKSTETRGSSHTDRIPFSSFSALSLNAAFTSSANVFFDTCTTS*

Sequence

>CNT30381182
CCAAATCCACAACCCTTTGAGAGTAACCCCATTCATTATCATACCAAGCAATCACCTTCACCATATCATCTCCCATAACCATGGTCAGGGATGAATCCAC
CGTTGATGATACGTCTGAGCACCTGAAGTCGACGGAAACAAGAGGCTCGTCACACACTGACAGGATACCCTTCAGCTCCTTCTCAGCACTTTCTCTGAAT
GCAGCGTTTACCTCTTCTGCAAATGTCTTTTTTGATACCTGCACCACCAGTTGAAGTTGGAACAATGTTTAGAGCTGCAGCTCGTGCCCGTCTGAGGTCA
CGGTGGCTGGCGTCCAGTAGCCTCTGGTCACCGGTGTATGAGTGAGTTGTAGTCATGGTTCCCTTGATGATGCCTGAAACCAGCCCGCAAGTTGTCA