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Detailed information on CNT30381108


BLAST search results

BLAST vs Swiss-Prot:
sp|P48386|CHS1_CAMSI, E-value = 7e-84

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30700733Manihot esculentaQuercus lobata55.7373.8780.39311forward
CNT30628905Manihot esculentaVigna unguiculata78.6730.7477.22439forward
CNT30507146Manihot esculentaNicotiana attenuata35.318.5279.7197forward
CNT30156272Manihot esculentaPistacia vera58.4221.1481.6326forward
CNT3096393Manihot esculentaSolanum tuberosum31.5429.6882.39176forward
CNT30610101Manihot esculentaGossypium raimondii78.6716.8479.95439forward
CNT30646903Manihot esculentaRosa chinensis40.8617.2581.14228forward
CNT30355925Manihot esculentaLactuca sativa38.5347.9980.93215forward
CNT30705527Manihot esculentaPrunus avium24.1929.1686.67135forward
CNT30645210Manihot esculentaCannabis sativa20.6115.1981.74115forward
CNT3030385Manihot esculentaTheobroma cacao27.638.683.77154forward
CNT3022840Manihot esculentaPopulus trichocarpa63.2636.2479.89353forward
CNT30114124Manihot esculentaFicus carica50.7224.6583.75283forward

Expression of CNT30381108

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MVCAAETSSNNGFSTWGTGSAPTMIAAAPSPNKAWPTRLSRCELLFRWPTQWPDLPPVEPCVLHLQSPFSFNRGS*

>peptide 2 (62 aa)
MKCKPNFSEMSVYSSVAVWKNGLCRRDKFKQWLLHLGHWICSHNDSCCTIAEQSLAYKTIKV*

Sequence

>CNT30381108
TCCTCATCTCATCCAAAATGAACAGCACACATGCACTCGACATGTTCCCGTAATCAGCAAGAACGTGCCTTGTGGCTCGTAGCTTTTCGGGCTTTAGCCC
CAGCTTGACCTCTACTTGATCAAGAATTGCAGGGCCACCAGGGTGAGCAATCCAAAACAGAGAGTTCCAATCTGAGATTCCCAGTGGCTGGAATGCTTCC
ACAAGCGACTTCTCTATGTTCTTTGAGATGAGCCCAGGAACATCCTTCAGCAGATGAAATGTAAGCCCAACTTCTCGGAGATGTCCGTCTATAGCTCCGT
CGCTGTCTGGAAGAATGGTTTGTGCCGCAGAGACAAGTTCAAACAATGGCTTCTCCACTTGGGGCACTGGATCTGCTCCCACAATGATAGCTGCTGCACC
ATCGCCGAACAAAGCTTGGCCTACAAGACTATCAAGGTGTGAGTTGCTGTTCCGATGGCCAACACAGTGGCCGGACCTTCCGCCCGTTGAGCCTTGCGTA
CTTCATCTACAGTCACCATTTTCTTTTAATCGAGGAAGTTGAGGTGATGGAGAACTGG