« Back to Manihot esculenta search


Detailed information on CNT30381087


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30512995Manihot esculentaJuglans regia23.3429.687.21172forward
CNT30489557Manihot esculentaOlea europaea24.1535.3984.83178reverse complement
CNT30600040Manihot esculentaFraxinus excelsior24.2921.2885.47179reverse complement
CNT30608750Manihot esculentaGossypium raimondii26.4676.1789.23195forward

Expression of CNT30381087

Peptides detected in this lncRNA

>peptide 1 (31 aa)
SSFWKFDTTVGTLLILNIKLSLILAYNSQNN*

Sequence

>CNT30381087
CTCCTCTTTCTGGAAATTTGACACAACAGTAGGAACCCTCTTGATCCTTAACATCAAATTATCACTCATCTTGGCTTACAATTCCCAAAACAATTAAATC
CCAATAAACTTGCTGAATCGAGATGTAAAAGCTCTAAAATACTCTTATCTTGCTTACGGCCTACAACTTAATCTTATATAAATATATCCTAAAACTAATA
GACAAAGGAAAGGAGGGAACCACCACCAGCAAGAAAGAGGAGATCGGAAGGGCTGCCGCCTTCAGAAGGCAAAGCACCACGTCCACCGTGCGGCGAAGGG
TTGCTCTCGTTCACACAACCCTTGCGTCGTACAGCCCGGACATGTATTAGAGGCCGAGTTACTCTGTGTATAGCCGTGATGTCTACAACTTGTCTACCCT
GGGTATTACCCCAAGAACTCCTCTCTTTCAAAAACAAAACTCCACCCTTTTAACTCCAAAACACCATACACTCGGGTCCCTTTCAAATAGAGAAACAAAC
AAGGCCTTCGACGAAAATTTCCGGAGGGCAAGGTCCGTTTTCTAAAATTTTTGACGTGGGTATTAGATTACAGGAAGAAGGAAGGTAAATAGGATGTGGG
TAGTTGTGAGATGAGAGGTAGTGGAGGAGAGGAGTTGTTATATAGATAAGAGGGAAGGGGTAGTTGTGGCTGAGATTGCCGTGAGATGTGTAGTAGGGGT
AGTAATGCAATATTGAAACTTGAAAGTGACTTTTGTC