Detailed information on CNT30381084


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08298|RD22_ARATH, E-value = 4e-81

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30516848Manihot esculentaJuglans regia26.7962.3177.94281forward
CNT30727306Manihot esculentaCorchorus capsularis20.7820.381.65218forward
CNT30157112Manihot esculentaPistacia vera19.1650.6382.59201forward
CNT30152079Manihot esculentaPrunus persica7.8221.1986.5982forward

Expression of CNT30381084

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MTEDGTNCIIFLQASSWEPKQRGPEEGNGKQELFLALL*

>peptide 2 (54 aa)
MANRNCSWLYFEHLEGQMLWPLWFVLNGNKRQHTHSSACGTPQICHPPSSLLQL*

>peptide 3 (59 aa)
MAIKDSIRIVLPVAHHRFVTRHLLCSSCNYIFLQLSLVFHLCGYCLNILSKHVSAEVNH*

>peptide 4 (91 aa)
MKLIFGGSIIVGEWVWPWFYSNIYRLSLVSSVNSYSTFANTYICSLPRLSSVNTNASTSHINSSTRFSFPCVYIYSTLPNVYRSAAGFSFS*

Sequence

>CNT30381084
TGGGCATTTAGTTACAATAAACTGTCATGACTGAAGATGGGACTAACTGTATAATATTTCTGCAGGCGTCTAGTTGGGAACCCAAACAACGTGGTCCTGA
GGAAGGAAATGGCAAACAGGAACTGTTCCTGGCTTTACTTTGAGCACCTGGAAGGCCAAATGCTTTGGCCTTTGTGGTTTGTGTTGAATGGCAATAAAAG
ACAGCATACGCATAGTTCTGCCTGTGGCACACCACAGATTTGTCACCCGCCATCTTCTTTGCTCCAGCTGTAATTATATATTTCTGCAACTGAGTTTGGT
TTTCCACCTCTGTGGATATTGCCTGAACATTCTTTCCAAGCATGTGAGTGCTGAAGTCAATCATTGACTCTAGTGAAGTTGCACAATGTTTCTCCTCTCC
TTTAATTCCAGGTTCTTCACACTCTCTGATTGTATTCTTCATTATCTCAGCTTCCATTGATCCCTCTTTTACTGAAAACTGGTTAAAAATTTCTGGTAAC
TTGTTCGATGAAAAGGGTAGTGAATTGGCAATTTGACGTGGTAAGAAAGTTGTTGGGTTTGTGTTTTTGGTAAAGTGCAAGTTCATGGTTTTGCCGGGAT
ACATGTCCTTTTCCATGAAAAATAGAGCCACGTTTCGGTCATCATGAAGTTGATTTTCGGTGGCAGCATAATTGTAGGCGAATGGGTCTGGCCCTGGTTT
TACTCCAACATATACAGGCTTTCCCTTGTGTCCAGTGTTAACAGTTACTCCACCTTTGCCAACACTTACATTTGTTCTCTTCCCAGGCTTTCCAGTGTTA
ACACCAACGCCTCTACCTCCCACATTAACAGTAGTACCCGGTTTTCCTTTCCCTGTGTTTACATTTACTCCACCCTTCCCAACGTTTACAGAAGTGCCGC
TGGGTTTTCCTTTTCCTGAATTAACATTTACTCCGCCCTTCCCTACATTGACAGTAATCTTTGACAGCTTTTGGCATTGGCGTGTTAGGCAGAACTGAGT
TCCAGTATTCCTCAGGTGGTGAGGCAGCATGACATGTCACTAGCGCAAT