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Detailed information on CNT30381078


BLAST search results

BLAST vs Swiss-Prot:
sp|Q08298|RD22_ARATH, E-value = 1e-74

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30515780Manihot esculentaJuglans regia21.1733.4384.3242forward
CNT30703016Manihot esculentaQuercus lobata24.8549.3180.28284forward
CNT30727307Manihot esculentaCorchorus capsularis35.8729.6282.68410forward
CNT30559861Manihot esculentaActinidia chinensis23.1822.5781.51265forward
CNT30570403Manihot esculentaVitis vinifera32.5548.6380.38372forward
CNT3033699Manihot esculentaTheobroma cacao48.4739.7181.23554forward

Expression of CNT30381078

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MYLYGRLLLLEPLFRQHPLRKPCKPLWFVLNGNKRQHTHSSACGTPQICHPPSSLLQL*

>peptide 2 (59 aa)
MAIKDSIRIVLPVAHHRFVTRHLLCSSCNYIFLQLSLVFHLCGYCLNILSKHVSAEVNH*

>peptide 3 (32 aa)
FIYLPLLGGSIFVSKRNSTYDPMVILVCFTIS*

Sequence

>CNT30381078
AATTTATATATCTTCCGTTGTTAGGGGGTTCAATTTTTGTTTCCAAAAGGAACAGCACATATGATCCCATGGTAATCCTTGTGTGTTTCACCATTAGTTG
ATCATTTAGATCACGGAGGGCAATTTCTGCTGGTTATTCTTTCATATGGCGTCTAGTTGGGAACCCAAACAACGTGGTCCTGAGGAAGGAAATGGCAAAC
AGGAACTGTTCCTGGCTTTACTTTGAGCACCTGGAAGGCCAAATGCTTTGGGTTCCAAGCTGATGTATCTGTATGGCAGATTGCTACTGCTTGAGCCTTT
GTTCCGTCAGCACCCTCTAAGGAAACCATGTAAGCCTTTGTGGTTTGTGTTGAATGGCAATAAAAGACAGCATACGCATAGTTCTGCCTGTGGCACACCA
CAGATTTGTCACCCGCCATCTTCTTTGCTCCAGCTGTAATTATATATTTCTGCAACTGAGTTTGGTTTTCCACCTCTGTGGATATTGCCTGAACATTCTT
TCCAAGCATGTGAGTGCTGAAGTCAATCATTGACTCTAGTGAAGTTGCACAATGTTTCTCCTCTCCTTTAATTCCAGGTTCTTCACACTCTCTGATTGTA
TTCTTCATTATCTCAGCTTCCATTGATCCCTCTTTTACTGAAAACTGGTTAAAAATTTCTGGTAACTTGTTCGATGAAAAGGGTAGTGAATTGGCAATTT
GACGTGGTAAGAAAGTTGTTGGGTTTGTGTTTTTGGTAAAGTGCAAGTTCATGGAGCTTAGAAAAGAGACTAGATTCATTTTTTCAGCTAGGAGATTAAT
CAACTTCTGTGTTGATCAAGATCTTTGAACTCTATGAAATGACACAATTATTGCTGTTGCTGTAATCTTGTTGTGCTTGTAACTTGACAGACATCATCAT
CTTTACAAACATGTACATACTTTATGAATATTTAGAAATTAAAGTGATATTCAGTGAGTTAAGTTGACATCTTCAAGAGACCAATCCAACGTCTCCAAAT
GTTTATTCTGTATTGATTATGGACTGTGACGCATACTTGATAGGAGTTCTGTTTCTGATGAAACCGAGTAAAGAATAGTCTGAGATCTTGAGTACTGACC
TGGCTGTAGAAGATCTTTGACAGCTTTTGGCATTGGCGTGTTA