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Detailed information on CNT30380945


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39615|PSAD_CHLRE, E-value = 2e-43

BLAST vs NONCODE:
NONMEST000543, E-value = 8e-114

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30651207Manihot esculentaRosa chinensis33.1536.1988.57245forward

Expression of CNT30380945

Peptides detected in this lncRNA

>peptide 1 (44 aa)
MAAPPVGISNKTPPPEPFSANHRCCRQKLAMGCLGPTPFFPLQQ*

>peptide 2 (30 aa)
FGVNLIRQLQILKNIKITGSFTGIFFFIEK*

Sequence

>CNT30380945
TTTGGAGTGAATTTAATTAGACAGCTTCAAATTCTTAAAAATATTAAAATTACAGGATCCTTTACGGGCATTTTTTTTTTTATTGAAAAGTAAAAAGGAG
TAAAATTACACCAAACAACAGTAAAAATAATCACATAAAATCACAGATCGTAAACTTGCTTCCCAGTGAACTTCACCTCAATTGGACTCGCATTCTTTCC
AATTGACCTGAAATTCAGCCCAACACCTTGACGCCCTGGGTTCACTTTCTCAGGATAAACCCCATCTTTAGGGTGCAAATACTGAACTTCCCCATTTGGA
AACACCCTGTAAAACTGGTACTTAATCTTGTATTTGGACCTCAGCCTTGTCCCAAGAGCCAAGCACTGCTCTTTCCTAGCTAGCTTCAGCAAGTTAGGAC
CTTGCCTCATAATGGCTGCACCCCCAGTGGGCATTTCAAATAAAACTCCTCCACCTGAGCCTTTCTCAGCAAACCACCGGTGCTGCCGCCAAAAATTGGC
GATGGGGTGCTTGGGTCCAACTCCGTTTTTCCCTCTGCAGCAGTAGCCTTGATGGGAGTTAGAGGGTTGGAGTATTTAAGGGGTTTAGCAGCAGTTGGGA
TTGAGATAAAGGAGGATTGATTCCATGGCACGATCACATGGTTGCTTGATTTAATGGTGGTGGTGGGTGTGAAGAGAGAGGCTTGAGTTGCCATTGCCAT
AAGGACTTGGAGAACTGTGTGTGATCAAGAAGATAGAAG