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Detailed information on CNT30380859


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9LM15|RA213_ARATH, E-value = 2e-25

BLAST vs NONCODE:
NONMEST000557, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30702960Manihot esculentaQuercus lobata23.8927.8388.14118forward
CNT30163033Manihot esculentaPistacia vera24.498.9286.78121forward
CNT30620999Manihot esculentaCajanus cajan23.487.6783.62116forward

Expression of CNT30380859

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MKKGLILGGRRRVRKGKVIVRSRGKRWQRRRRRCS*

>peptide 2 (31 aa)
ESGTVLGESDLGHPFTPVSLPHSSVEFGGFR*

Sequence

>CNT30380859
CAGAGTCGGGTACGGTTCTTGGGGAGTCTGATCTCGGCCACCCATTTACCCCAGTGTCGCTGCCTCACTCCTCTGTAGAGTTTGGTGGGTTTCGGTGAGC
CCACTTGCTTCATGGGGATGGGTTTGGGACCTAAAAAGCTGGGGGTATGGTGATTGAGCCCTATTGAACCGGGTTGCTGAAGAGCAGTGGGATCATCGAT
CGAGAACCCTGTTGAAAATTGAAGGGTAGTCGATGTGGAGCAACCATCAGGATGAAAAAAGGCCTGATCTTGGGAGGCAGAAGGAGAGTAAGAAAAGGGA
AGGTAATTGTAAGAAGTAGAGGGAAGAGGTGGCAAAGAAGAAGGAGAAGGTGTAGTTGATGAGGAAGCACTTTTCATAAAAGGCTCAAGTGCTTCCATTA
GCTCACCCCCGAAGGGAGCTGACTGAGGATGTCTGCTACTATAGAAATCCATAATAGCTGCCATGCCTTCAAAAGCTAAATTTCTCAACTAAAA