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Detailed information on CNT30380803


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692136Manihot esculentaOryza sativa34.3313.1582.61161forward
CNT30640190Manihot esculentaNymphaea colorata24.7313.4785.34116forward
CNT30377107Manihot esculentaArabidopsis thaliana59.9159.4182.56281forward
CNT30501026Manihot esculentaCoffea canephora25.597.8686.67120forward
CNT30281433Manihot esculentaChenopodium quinoa37.7417.184.18177forward
CNT3070082Manihot esculentaQuercus suber16.230.6586.8476forward
CNT30708912Manihot esculentaGlycine max25.3713.6682.35119forward
CNT30305192Manihot esculentaTriticum aestivum52.8845.7682.26248forward
CNT30563752Manihot esculentaActinidia chinensis31.5630.3987.84148forward
CNT30238041Manihot esculentaBrassica oleracea28.7817.7681.48135forward
CNT30668770Manihot esculentaTriticum dicoccoides52.8832.3882.66248forward
CNT30260467Manihot esculentaBrassica rapa31.1335.0184.93146forward
CNT30475173Manihot esculentaSaccharum spontaneum52.0332.8480.33244forward
CNT301996Manihot esculentaZea mays36.6739.4581.4172forward
CNT30715065Manihot esculentaMalus domestica golden64.6121.3182.84303forward
CNT30624536Manihot esculentaDaucus carota48.416.1682.82227forward
CNT30688530Manihot esculentaTriticum urartu51.1756.682.5240forward
CNT30348304Manihot esculentaEragrostis tef17.4830.3784.1582forward
CNT30369978Manihot esculentaOryza glumipatula35.6122.2482.63167forward
CNT30574555Manihot esculentaVitis vinifera23.2413.1882.57109forward
CNT3051687Manihot esculentaAmborella trichopoda28.575.9482.84134forward
CNT3022569Manihot esculentaPopulus trichocarpa39.6621.4581.18186forward
CNT3038372Manihot esculentaCucumis melo61.1926.0983.62287forward
CNT30576776Manihot esculentaOryza barthii44.3558.7681.73208forward

Expression of CNT30380803

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MCDLGLGLRAWTMSGNFIPSRMKKTGKLLPTMSKLP

>peptide 2 (48 aa)
MEFYIACLPRFVDQSIGVNTRAFHVPVILWDTNIVKEKSEHMQALRVV*

Sequence

>CNT30380803
TGGTGAAAAGGAGCGGTATCTGTCCCCAGGCTGCTTGAAAAAATTCTAGTTTGCAGCAACTTATCATCAGAATAATAGACACCAGGCACCACAATAGAAG
GGCAAAATGCAAGCTGCTCGTTCTCAGTAAAGAAGTTATCAATATTCCTGTTCAAAACCAAGCGACCCACAGGTCGGTTTCCAATGGAATTTTACATAGC
GTGCCTTCCCAGATTTGTCGATCAAAGTATAGGTGTTAACACCAGAGCCTTCCATGTGCCTGTAATCCTGTGGGATACCAATATCGTCAAAGAGAAAAGT
GAACATATGCAGGCTCTCAGGGTGGTGTGAGAAGAAGTCAAGTATCCTCCAGCTTTCCTGAATGTGTGATTTGGGGTTGGGTTTGAGGGCATGGACCATG
TCAGGGAACTTCATCCCATCACGGATGAAAAAGACAGGGAAATTGTTGCCCACCATGTCAAAGTTACCC