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Detailed information on CNT30380568


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9FIC8|GL116_ARATH, E-value = 2e-79

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3027612Manihot esculentaPopulus trichocarpa24.1611.4379.38194forward

Expression of CNT30380568

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MQPKQLLGFFQYSTGSESAQMETETHLLALKLWRKDDGQD*

>peptide 2 (37 aa)
MGGSDPKTAFAIVFTPGFWLVNAAKATAGVFPIFNWK*

>peptide 3 (39 aa)
MILICTPSWFEVSPATLSPEKKKSSAVTRVGSLQNFPFRN

>peptide 4 (31 aa)
MVRIRSDKTCINCSFQDCEDLCSSRVIVWWI*

>peptide 5 (31 aa)
MECLGQNIGVNGWIRSKNCICYCIHSWVLAS*

Sequence

>CNT30380568
TTTTGAATCTCTTTCATAAAACAAACACATTTCTCTTATTAAATGAGGAAAACAAACAGACTTGAAATGGTGCAACTTTGAGGAGAATATCACAATAATG
AATATCAAAATGATGAATCAACATCGCCGGCTAGCGGCAGAAACACATTCTCTTTATTTTGTTACCATTCTATAGAATAAGATGGTAAAATGAGGAAATT
AACAGCCACAAACACACGCGCACACATCAACTAATTGTAGCTATCGCTTTCTGATGGATCCACCCATTGTTCTTTTTGAAGCTTGCTCACCAGATCTTTG
TCCAGATGGAATGCCTTGGTCAGAACATTGGGGTTAATGGGTGGATCAGATCCAAAAACTGCATTTGCTATTGTATTCACTCCTGGGTTTTGGCTAGTTA
ATGCAGCCAAAGCAACTGCTGGGGTTTTTCCAATATTCAACTGGAAGTGAATCAGCCCAAATGGAAACAGAAACACATCTCCTGGCTTTAAAACTTTGGC
GAAAAGACGATGGTCAGGATTAGAAGTGACAAAACCTGCATAAACTGTTCCTTTCAAGACTGTGAGGATCTCTGCAGCTCGAGGGTGATTGTGTGGTGGA
TTTAGGCCACCATTTGCTGCATAATCAATTCGAACTAATGTAATCCCATTAGTGTTAAGTCCTGGGATCACATCGGCATCTATGATATTGATATGCACTC
CAAGCTGGTTTGAGGTGTCTCCAGCTACATTAAGCCCAGAAAAGAAGAAATCATCCGCTGTAACACGCGTTGGATCCTTGCAGAACTTCCCATTCAGGAA
CAC