« Back to Manihot esculenta search


Detailed information on CNT30380449


BLAST search results

BLAST vs Swiss-Prot:
sp|Q58G87|UBQ3_ORYSJ, E-value = 2e-156

BLAST vs NONCODE:
NONTPRT002153, E-value = 1e-88

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30546134Manihot esculentaIpomoea triloba67.6281.7382.63662forward
CNT30275114Manihot esculentaChenopodium quinoa69.8797.7183.92684forward
CNT30728102Manihot esculentaCorchorus capsularis69.7745.3284.77683forward
CNT30200687Manihot esculentaPisum sativum63.4394.3883.41621forward
CNT30506305Manihot esculentaNicotiana attenuata70.3873.0683.89689forward
CNT30609150Manihot esculentaGossypium raimondii69.9764.3884.38685forward
CNT30356895Manihot esculentaLactuca sativa68.1370.0683.81667forward
CNT3023130Manihot esculentaPopulus trichocarpa69.9772.4981.9685forward

Expression of CNT30380449

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVSLLSTSRVIVFPVKVFTKICMPPRRRRTRWRVDSFWML*

>peptide 2 (56 aa)
MRRCWSGGIPSLSWILALTLSMVSLLSTSRVMVFPVRVLTKICICIMTEHHLAKQN*

Sequence

>CNT30380449
GAACAGAAACAGATAAATTTTTATTTAATAGAAGTTAAGTAAAAACAGACATCATCCACAAGGCCATGAAGAGGCCAATCACACATCATCACATCTTAAA
ATAAGAGAGACCCATTAATTATGATCTCCCAACAACAAATTCATAGTAGAAATATAGAAACCCCTCAGATTCCACCACGCAGACGCAGGACAAGGTGAAG
GGTCGACTCTTTCTGGATGTTATAATCAGCAAGAGTCCTTCCATCCTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGATCTGGGGGAATACCCTCC
TTATCCTGAATCTTCGCCTTCACATTATCGATTGTGTCGCTGCTCTCCACCTCCAAAGTGATGGTCTTCCCAGTCAAGGTCTTCACGAAAATCTGCATCC
CTCCACGCAGACGAAGCACGAGGTGAAGGGTAGATTCCTTCTGAATGTTATAATCGGCTAATGTGCGGCCGTCCTCCAGCTGTTTTCCGGCAAAGATAAG
CCTTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCAATGGTGTCGCTGCTCTCGACCTCAAGGGTAATAGTCTTTCCG
GTCAAGGTTTTCACAAAGATCTGCATGCCACCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTTTGGATGTTGTAATCAGCCAAGGTACGGCCGT
CCTCAAGTTGCTTTCCGGCAAAGATGAGACGCTGCTGGTCTGGTGGGATACCTTCTTTATCCTGGATTTTGGCTTTGACGTTGTCGATGGTGTCGCTGCT
CTCGACCTCGAGAGTGATGGTTTTTCCGGTGAGGGTCTTAACGAAGATCTGCATCTGTATTATGACAGAACATCATTTAGCAAAACAGAACTAACAAAAA
TAAAAACCCACCATAAAATACATAAAAAAGAAATCAATTTTACCTTGAAGGAGCTTTTCTGATTGATTTCTTAGAACTT